Gcaud3319.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3319.t1
Unique NameGcaud3319.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_375_length_27991_cov_4.438244contigNODE_375_length_27991_cov_4.438244:22511..23044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01853T0
PFAMsCupin_1
Max annot lvl33154|Opisthokonta
Evalue4.41e-09
EggNOG OGs2BYKQ@1|root,2QQ4A@2759|Eukaryota,39PAK@33154|Opisthokonta
DescriptionSphaeroforma arctica JP610
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3319Gcaud3319Gracilaria caudata M_176_S67 malegeneNODE_375_length_27991_cov_4.438244 22511..23044 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1.stop1Gcaud3319.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_375_length_27991_cov_4.438244 22511..22513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1.CDS1Gcaud3319.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_375_length_27991_cov_4.438244 22511..23044 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1.exon1Gcaud3319.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_375_length_27991_cov_4.438244 22511..23044 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1.start1Gcaud3319.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_375_length_27991_cov_4.438244 23042..23044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3319.t1Gcaud3319.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_375_length_27991_cov_4.438244 22511..23044 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MTAAHTALLMLVLVCQLSVWTAVHASIPSQGSVTAAQTRNNLSDSDFCLD
YEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQLATQLH
PRGNEVINVVRGSARISFRFESDPRVAVNLRTVTNVVRAGRVTVIPQGLI
HDVKCVSSTPCELLSVANSADPGFVVV*
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spliced messenger RNA

>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:22511..23044- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGGCCCATACTGCGTTGCTGATGCTGGTGCTCGTTTGCCAGTT
ATCAGTTTGGACAGCTGTGCATGCGTCTATTCCGAGTCAAGGTTCGGTAA
CGGCTGCTCAGACTCGAAACAATCTGTCAGACTCCGACTTCTGTCTCGAT
TACGAAGAAGGTATACAAGGAGTGTTTCCTGATTATCTGCTACAAGCACT
TGAAGTGCAAGATTTCGCCGCGTTGGGTGCGGTGGATGTGCAGACAAGAT
TGTTGCGATTTCTGATGCAACCCGGCTCTCAACTGGCCACACAGCTGCAT
CCAAGAGGCAATGAAGTGATCAATGTGGTACGTGGATCGGCACGAATTAG
TTTTCGCTTTGAGTCGGATCCTCGGGTGGCTGTGAATCTGAGAACTGTTA
CGAATGTGGTGAGGGCGGGACGTGTTACTGTGATTCCGCAAGGACTTATT
CATGATGTGAAATGCGTGTCGAGCACTCCTTGTGAACTTTTGTCCGTGGC
GAATTCGGCGGATCCTGGTTTCGTGGTTGTCTGA
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protein sequence of Gcaud3319.t1

>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MTAAHTALLMLVLVCQLSVWTAVHASIPSQGSVTAAQTRNNLSDSDFCLD
YEEGIQGVFPDYLLQALEVQDFAALGAVDVQTRLLRFLMQPGSQLATQLH
PRGNEVINVVRGSARISFRFESDPRVAVNLRTVTNVVRAGRVTVIPQGLI
HDVKCVSSTPCELLSVANSADPGFVVV*
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mRNA from alignment at NODE_375_length_27991_cov_4.438244:22511..23044-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:22511..23044- (Gracilaria caudata M_176_S67 male)
ATGACTGCGGCCCATACTGCGTTGCTGATGCTGGTGCTCGTTTGCCAGTT
ATCAGTTTGGACAGCTGTGCATGCGTCTATTCCGAGTCAAGGTTCGGTAA
CGGCTGCTCAGACTCGAAACAATCTGTCAGACTCCGACTTCTGTCTCGAT
TACGAAGAAGGTATACAAGGAGTGTTTCCTGATTATCTGCTACAAGCACT
TGAAGTGCAAGATTTCGCCGCGTTGGGTGCGGTGGATGTGCAGACAAGAT
TGTTGCGATTTCTGATGCAACCCGGCTCTCAACTGGCCACACAGCTGCAT
CCAAGAGGCAATGAAGTGATCAATGTGGTACGTGGATCGGCACGAATTAG
TTTTCGCTTTGAGTCGGATCCTCGGGTGGCTGTGAATCTGAGAACTGTTA
CGAATGTGGTGAGGGCGGGACGTGTTACTGTGATTCCGCAAGGACTTATT
CATGATGTGAAATGCGTGTCGAGCACTCCTTGTGAACTTTTGTCCGTGGC
GAATTCGGCGGATCCTGGTTTCGTGGTTGTCTGA
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Coding sequence (CDS) from alignment at NODE_375_length_27991_cov_4.438244:22511..23044-

>Gcaud3319.t1 ID=Gcaud3319.t1|Name=Gcaud3319.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:22511..23044- (Gracilaria caudata M_176_S67 male)
ATGACTGCGGCCCATACTGCGTTGCTGATGCTGGTGCTCGTTTGCCAGTT
ATCAGTTTGGACAGCTGTGCATGCGTCTATTCCGAGTCAAGGTTCGGTAA
CGGCTGCTCAGACTCGAAACAATCTGTCAGACTCCGACTTCTGTCTCGAT
TACGAAGAAGGTATACAAGGAGTGTTTCCTGATTATCTGCTACAAGCACT
TGAAGTGCAAGATTTCGCCGCGTTGGGTGCGGTGGATGTGCAGACAAGAT
TGTTGCGATTTCTGATGCAACCCGGCTCTCAACTGGCCACACAGCTGCAT
CCAAGAGGCAATGAAGTGATCAATGTGGTACGTGGATCGGCACGAATTAG
TTTTCGCTTTGAGTCGGATCCTCGGGTGGCTGTGAATCTGAGAACTGTTA
CGAATGTGGTGAGGGCGGGACGTGTTACTGTGATTCCGCAAGGACTTATT
CATGATGTGAAATGCGTGTCGAGCACTCCTTGTGAACTTTTGTCCGTGGC
GAATTCGGCGGATCCTGGTTTCGTGGTTGTCTGA
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