Gcaud3299.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud3299.t2
Unique Name	Gcaud3299.t2
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	560

Homology

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BLAST of Gcaud3299.t2 vs. uniprot
Match: A0A2V3IFU4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFU4_9FLOR)

HSP 1 Score: 580 bits (1495), Expect = 1.080e-200
Identity = 300/560 (53.57%), Postives = 394/560 (70.36%), Query Frame = 0

Query:    2 LFGLIHGSEKLEKAS-SLTTLAQVKKAIEHLRIKDKNVVPDKNVSLWNLDFLKHISDMNELSEKTIQSELSRTSEASSDSLVDSTKRIGGETAPEASREKGRGKDPPSLARMVKEMIKVVADASQKRSSHSSIRIGRADIPREKVTAVGDVDGNGYEDYIVANPASMNDTGTIRLYLMAADNKFLYTRDLVPGKYGFVCSPLRVGDRFGDSVEKIASDTPNFSFVTVTAPGDGSVPGGKGAYYILQLSDKGNVINSAKLSAKTIETVLAKSANGNEPDNSH--SLNRSILSKKIVDILSNKTSMLLVRKEGEIKGAYVISSAEDHRMLKDIEQKMTPRKRLASLRLESPLVRADVSSSCFFNDTHCACASKAPPTGSGQCTQVVGTEASTGKTLCETRDCMASYSCLCEGTELCVRSERTVTTFVVEGAAPGGKQYCNSVQKTITENVLIAGAQVPVILSVNDMPPYNATHCRCAKKQSVTGAAKCLDVLRALGGVNYVCTERDCRIGPGEYICDAFGDSYCSRSFVDKVRFVKDRVKADEAGAVFCHQEAYQAESLVKI 558
            LFG++H +E  E+A+    TLA ++KA+E+L  K+KN V   N + WNL FLK + D    ++K   +E  ++ E     +++ +      T  E ++    GK    +               +  S    + IG + IP  KV AVGDVDGNG ED+IV NPAS  + GTIRLYLMA DNKFLYTRDLVPGKYGF    L+ GDRFG SV KI++D+PNFSF+ VTAPGD  VPG KGA+Y+LQLSDKGNV+N+ KLSA TIE + ++ ++G E D+     L  S LSK+IVDILSNKTSMLLVRKEG+IKGAYVISS +D  +LK +E++MTPR +L ++RL SP VR  +SSSCFFNDTHCAC SK+P  GS  CTQVVGT+ STG+TLC+ RDC AS+ C C+GT LC R+ERT+T+++ EG APGG  YC+  Q+TITENV+I GA VPV++ +ND+PP+NATHCRC  KQ++ G++ CLD LR    +  VC+ R+CRIG  E++CDAFGDSYC R+F DK+ +V +  + +E G V+CH+E+YQ+E LVK+
Sbjct:   18 LFGVLHATESTERATLGSKTLAHMRKAVEYLSAKEKNDVKT-NSAPWNLHFLKVMVDKAGNADKVNATEHFQSPEP----VIEES------TTDELNQNMTTGKSQSPV---------------KPGSEEDFVMIGESKIPANKVAAVGDVDGNGVEDFIVRNPASNYNRGTIRLYLMAKDNKFLYTRDLVPGKYGFNSDSLKPGDRFGASVLKISNDSPNFSFIAVTAPGDRMVPGKKGAFYVLQLSDKGNVLNNVKLSASTIEKIASQQSSGREVDSVTIPELKESSLSKRIVDILSNKTSMLLVRKEGQIKGAYVISSNDDQMLLKHLEKQMTPRNKLETMRLLSPAVRPALSSSCFFNDTHCACGSKSPTVGSNDCTQVVGTDQSTGRTLCQKRDCQASFQCSCDGTSLCQRAERTMTSYITEGPAPGGMMYCSPQQRTITENVVIPGASVPVVVDINDLPPFNATHCRCTPKQAIVGSSTCLDFLRTESSIAIVCSVRECRIGSSEHVCDAFGDSYCERTFADKIHYVNNGDRLNEPGTVYCHRESYQSEVLVKV 551

The following BLAST results are available for this feature:

BLAST of Gcaud3299.t2 vs. uniprot

BLAST of Gcaud3299.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFU4_9FLOR	1.080e-200	53.57	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028994	Integrin alpha, N-terminal	GENE3D	2.130.10.130		coord: 143..318 e-value: 1.7E-8 score: 36.0
IPR028994	Integrin alpha, N-terminal	SUPERFAMILY	69318	Integrin alpha N-terminal domain	coord: 147..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:47723..49402 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2	Gcaud3299.t2	Gracilaria caudata M_176_S67 male	mRNA	NODE_84_length_54915_cov_4.457829 47723..49402 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=560bp
MLFGLIHGSEKLEKASSLTTLAQVKKAIEHLRIKDKNVVPDKNVSLWNLD
FLKHISDMNELSEKTIQSELSRTSEASSDSLVDSTKRIGGETAPEASREK
GRGKDPPSLARMVKEMIKVVADASQKRSSHSSIRIGRADIPREKVTAVGD
VDGNGYEDYIVANPASMNDTGTIRLYLMAADNKFLYTRDLVPGKYGFVCS
PLRVGDRFGDSVEKIASDTPNFSFVTVTAPGDGSVPGGKGAYYILQLSDK
GNVINSAKLSAKTIETVLAKSANGNEPDNSHSLNRSILSKKIVDILSNKT
SMLLVRKEGEIKGAYVISSAEDHRMLKDIEQKMTPRKRLASLRLESPLVR
ADVSSSCFFNDTHCACASKAPPTGSGQCTQVVGTEASTGKTLCETRDCMA
SYSCLCEGTELCVRSERTVTTFVVEGAAPGGKQYCNSVQKTITENVLIAG
AQVPVILSVNDMPPYNATHCRCAKKQSVTGAAKCLDVLRALGGVNYVCTE
RDCRIGPGEYICDAFGDSYCSRSFVDKVRFVKDRVKADEAGAVFCHQEAY
QAESLVKIF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028994	Integrin_alpha_N