Gcaud3299.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3299.t2
Unique Name	Gcaud3299.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:47723..49402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3299	Gcaud3299	Gracilaria caudata M_176_S67 male	gene	NODE_84_length_54915_cov_4.457829 47723..49402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2.start1	Gcaud3299.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_84_length_54915_cov_4.457829 47723..47725 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2.CDS1	Gcaud3299.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_84_length_54915_cov_4.457829 47723..49402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2.exon1	Gcaud3299.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_84_length_54915_cov_4.457829 47723..49402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2.stop1	Gcaud3299.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_84_length_54915_cov_4.457829 49400..49402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3299.t2	Gcaud3299.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_84_length_54915_cov_4.457829 47723..49402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+
coding sequence from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+

mRNA sequence

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=560bp
MLFGLIHGSEKLEKASSLTTLAQVKKAIEHLRIKDKNVVPDKNVSLWNLD
FLKHISDMNELSEKTIQSELSRTSEASSDSLVDSTKRIGGETAPEASREK
GRGKDPPSLARMVKEMIKVVADASQKRSSHSSIRIGRADIPREKVTAVGD
VDGNGYEDYIVANPASMNDTGTIRLYLMAADNKFLYTRDLVPGKYGFVCS
PLRVGDRFGDSVEKIASDTPNFSFVTVTAPGDGSVPGGKGAYYILQLSDK
GNVINSAKLSAKTIETVLAKSANGNEPDNSHSLNRSILSKKIVDILSNKT
SMLLVRKEGEIKGAYVISSAEDHRMLKDIEQKMTPRKRLASLRLESPLVR
ADVSSSCFFNDTHCACASKAPPTGSGQCTQVVGTEASTGKTLCETRDCMA
SYSCLCEGTELCVRSERTVTTFVVEGAAPGGKQYCNSVQKTITENVLIAG
AQVPVILSVNDMPPYNATHCRCAKKQSVTGAAKCLDVLRALGGVNYVCTE
RDCRIGPGEYICDAFGDSYCSRSFVDKVRFVKDRVKADEAGAVFCHQEAY
QAESLVKIF*

spliced messenger RNA

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTTGGCTTAATTCACGGCAGCGAGAAATTGGAGAAAGCTTCAAG
TTTGACGACATTAGCCCAGGTGAAGAAAGCAATAGAGCATCTCCGCATAA
AGGATAAGAACGTGGTGCCCGACAAGAACGTATCGTTATGGAACCTCGAC
TTCCTGAAGCATATTTCGGACATGAATGAACTCTCAGAGAAGACCATCCA
AAGCGAACTCTCTCGTACTTCAGAAGCCTCGTCGGATAGCCTTGTCGACA
GCACTAAAAGGATCGGCGGTGAAACGGCCCCCGAAGCCAGCAGAGAGAAA
GGCAGGGGCAAAGACCCGCCGTCCCTCGCTCGCATGGTGAAAGAAATGAT
CAAAGTCGTGGCAGACGCCTCTCAAAAGCGTTCCTCACATTCGTCCATTC
GAATCGGACGCGCCGATATTCCGCGCGAAAAGGTGACGGCAGTTGGAGAC
GTTGACGGGAATGGCTATGAAGATTACATTGTGGCAAACCCAGCGTCTAT
GAATGATACCGGCACAATTCGTCTGTACCTGATGGCCGCCGACAACAAGT
TCTTATACACGAGAGATCTGGTTCCCGGAAAGTATGGATTCGTGTGTTCA
CCGCTCAGGGTTGGAGATCGATTCGGGGACTCGGTAGAGAAGATTGCAAG
CGATACACCCAACTTTTCATTCGTGACGGTCACTGCTCCCGGAGATGGCT
CAGTGCCAGGAGGCAAAGGAGCGTACTACATTCTGCAGTTGTCCGATAAG
GGCAACGTGATCAACAGCGCCAAGTTGTCCGCCAAGACGATTGAAACCGT
ATTGGCTAAATCGGCGAACGGTAACGAGCCAGACAACTCGCATTCCCTCA
ACCGATCCATCCTCTCCAAGAAGATTGTGGACATTCTCAGCAACAAGACG
TCCATGTTGCTCGTTCGCAAGGAAGGAGAAATCAAGGGTGCGTACGTCAT
CTCTTCTGCAGAAGATCACAGGATGTTGAAGGACATTGAGCAAAAGATGA
CGCCTAGGAAAAGACTCGCTTCGCTGCGTCTAGAATCGCCGCTAGTTCGA
GCAGACGTTTCAAGCAGCTGTTTCTTTAACGACACACACTGCGCCTGCGC
CTCAAAAGCACCGCCAACAGGCTCTGGGCAATGCACGCAAGTGGTCGGCA
CAGAAGCGTCAACCGGAAAGACTCTCTGTGAGACGCGCGACTGCATGGCC
TCTTATTCCTGTCTGTGCGAAGGCACAGAGCTGTGCGTGCGAAGCGAACG
TACCGTGACCACGTTTGTCGTGGAGGGCGCGGCGCCCGGCGGAAAGCAGT
ATTGCAACAGCGTACAGAAGACCATCACCGAAAACGTATTAATCGCCGGC
GCGCAAGTGCCGGTGATTCTGAGCGTGAACGACATGCCTCCGTACAATGC
AACGCATTGTCGGTGCGCAAAGAAGCAATCGGTGACTGGAGCGGCGAAAT
GTTTAGACGTTCTCCGCGCTTTGGGTGGTGTGAACTACGTCTGCACGGAG
AGAGATTGTAGGATCGGACCGGGTGAATACATTTGTGATGCGTTTGGAGA
CTCGTATTGCTCGCGCAGTTTTGTGGACAAGGTGCGTTTTGTGAAGGACA
GGGTGAAAGCAGACGAGGCTGGAGCGGTGTTCTGTCACCAAGAGGCGTAC
CAAGCAGAGAGCTTAGTTAAGATATTCTAA

protein sequence of Gcaud3299.t2

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=560bp
MLFGLIHGSEKLEKASSLTTLAQVKKAIEHLRIKDKNVVPDKNVSLWNLD
FLKHISDMNELSEKTIQSELSRTSEASSDSLVDSTKRIGGETAPEASREK
GRGKDPPSLARMVKEMIKVVADASQKRSSHSSIRIGRADIPREKVTAVGD
VDGNGYEDYIVANPASMNDTGTIRLYLMAADNKFLYTRDLVPGKYGFVCS
PLRVGDRFGDSVEKIASDTPNFSFVTVTAPGDGSVPGGKGAYYILQLSDK
GNVINSAKLSAKTIETVLAKSANGNEPDNSHSLNRSILSKKIVDILSNKT
SMLLVRKEGEIKGAYVISSAEDHRMLKDIEQKMTPRKRLASLRLESPLVR
ADVSSSCFFNDTHCACASKAPPTGSGQCTQVVGTEASTGKTLCETRDCMA
SYSCLCEGTELCVRSERTVTTFVVEGAAPGGKQYCNSVQKTITENVLIAG
AQVPVILSVNDMPPYNATHCRCAKKQSVTGAAKCLDVLRALGGVNYVCTE
RDCRIGPGEYICDAFGDSYCSRSFVDKVRFVKDRVKADEAGAVFCHQEAY
QAESLVKIF*

mRNA from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+ (Gracilaria caudata M_176_S67 male)
ATGCTCTTTGGCTTAATTCACGGCAGCGAGAAATTGGAGAAAGCTTCAAG
TTTGACGACATTAGCCCAGGTGAAGAAAGCAATAGAGCATCTCCGCATAA
AGGATAAGAACGTGGTGCCCGACAAGAACGTATCGTTATGGAACCTCGAC
TTCCTGAAGCATATTTCGGACATGAATGAACTCTCAGAGAAGACCATCCA
AAGCGAACTCTCTCGTACTTCAGAAGCCTCGTCGGATAGCCTTGTCGACA
GCACTAAAAGGATCGGCGGTGAAACGGCCCCCGAAGCCAGCAGAGAGAAA
GGCAGGGGCAAAGACCCGCCGTCCCTCGCTCGCATGGTGAAAGAAATGAT
CAAAGTCGTGGCAGACGCCTCTCAAAAGCGTTCCTCACATTCGTCCATTC
GAATCGGACGCGCCGATATTCCGCGCGAAAAGGTGACGGCAGTTGGAGAC
GTTGACGGGAATGGCTATGAAGATTACATTGTGGCAAACCCAGCGTCTAT
GAATGATACCGGCACAATTCGTCTGTACCTGATGGCCGCCGACAACAAGT
TCTTATACACGAGAGATCTGGTTCCCGGAAAGTATGGATTCGTGTGTTCA
CCGCTCAGGGTTGGAGATCGATTCGGGGACTCGGTAGAGAAGATTGCAAG
CGATACACCCAACTTTTCATTCGTGACGGTCACTGCTCCCGGAGATGGCT
CAGTGCCAGGAGGCAAAGGAGCGTACTACATTCTGCAGTTGTCCGATAAG
GGCAACGTGATCAACAGCGCCAAGTTGTCCGCCAAGACGATTGAAACCGT
ATTGGCTAAATCGGCGAACGGTAACGAGCCAGACAACTCGCATTCCCTCA
ACCGATCCATCCTCTCCAAGAAGATTGTGGACATTCTCAGCAACAAGACG
TCCATGTTGCTCGTTCGCAAGGAAGGAGAAATCAAGGGTGCGTACGTCAT
CTCTTCTGCAGAAGATCACAGGATGTTGAAGGACATTGAGCAAAAGATGA
CGCCTAGGAAAAGACTCGCTTCGCTGCGTCTAGAATCGCCGCTAGTTCGA
GCAGACGTTTCAAGCAGCTGTTTCTTTAACGACACACACTGCGCCTGCGC
CTCAAAAGCACCGCCAACAGGCTCTGGGCAATGCACGCAAGTGGTCGGCA
CAGAAGCGTCAACCGGAAAGACTCTCTGTGAGACGCGCGACTGCATGGCC
TCTTATTCCTGTCTGTGCGAAGGCACAGAGCTGTGCGTGCGAAGCGAACG
TACCGTGACCACGTTTGTCGTGGAGGGCGCGGCGCCCGGCGGAAAGCAGT
ATTGCAACAGCGTACAGAAGACCATCACCGAAAACGTATTAATCGCCGGC
GCGCAAGTGCCGGTGATTCTGAGCGTGAACGACATGCCTCCGTACAATGC
AACGCATTGTCGGTGCGCAAAGAAGCAATCGGTGACTGGAGCGGCGAAAT
GTTTAGACGTTCTCCGCGCTTTGGGTGGTGTGAACTACGTCTGCACGGAG
AGAGATTGTAGGATCGGACCGGGTGAATACATTTGTGATGCGTTTGGAGA
CTCGTATTGCTCGCGCAGTTTTGTGGACAAGGTGCGTTTTGTGAAGGACA
GGGTGAAAGCAGACGAGGCTGGAGCGGTGTTCTGTCACCAAGAGGCGTAC
CAAGCAGAGAGCTTAGTTAAGATATTCTAA

Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+

>Gcaud3299.t2 ID=Gcaud3299.t2|Name=Gcaud3299.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1680bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:47723..49402+ (Gracilaria caudata M_176_S67 male)
ATGCTCTTTGGCTTAATTCACGGCAGCGAGAAATTGGAGAAAGCTTCAAG
TTTGACGACATTAGCCCAGGTGAAGAAAGCAATAGAGCATCTCCGCATAA
AGGATAAGAACGTGGTGCCCGACAAGAACGTATCGTTATGGAACCTCGAC
TTCCTGAAGCATATTTCGGACATGAATGAACTCTCAGAGAAGACCATCCA
AAGCGAACTCTCTCGTACTTCAGAAGCCTCGTCGGATAGCCTTGTCGACA
GCACTAAAAGGATCGGCGGTGAAACGGCCCCCGAAGCCAGCAGAGAGAAA
GGCAGGGGCAAAGACCCGCCGTCCCTCGCTCGCATGGTGAAAGAAATGAT
CAAAGTCGTGGCAGACGCCTCTCAAAAGCGTTCCTCACATTCGTCCATTC
GAATCGGACGCGCCGATATTCCGCGCGAAAAGGTGACGGCAGTTGGAGAC
GTTGACGGGAATGGCTATGAAGATTACATTGTGGCAAACCCAGCGTCTAT
GAATGATACCGGCACAATTCGTCTGTACCTGATGGCCGCCGACAACAAGT
TCTTATACACGAGAGATCTGGTTCCCGGAAAGTATGGATTCGTGTGTTCA
CCGCTCAGGGTTGGAGATCGATTCGGGGACTCGGTAGAGAAGATTGCAAG
CGATACACCCAACTTTTCATTCGTGACGGTCACTGCTCCCGGAGATGGCT
CAGTGCCAGGAGGCAAAGGAGCGTACTACATTCTGCAGTTGTCCGATAAG
GGCAACGTGATCAACAGCGCCAAGTTGTCCGCCAAGACGATTGAAACCGT
ATTGGCTAAATCGGCGAACGGTAACGAGCCAGACAACTCGCATTCCCTCA
ACCGATCCATCCTCTCCAAGAAGATTGTGGACATTCTCAGCAACAAGACG
TCCATGTTGCTCGTTCGCAAGGAAGGAGAAATCAAGGGTGCGTACGTCAT
CTCTTCTGCAGAAGATCACAGGATGTTGAAGGACATTGAGCAAAAGATGA
CGCCTAGGAAAAGACTCGCTTCGCTGCGTCTAGAATCGCCGCTAGTTCGA
GCAGACGTTTCAAGCAGCTGTTTCTTTAACGACACACACTGCGCCTGCGC
CTCAAAAGCACCGCCAACAGGCTCTGGGCAATGCACGCAAGTGGTCGGCA
CAGAAGCGTCAACCGGAAAGACTCTCTGTGAGACGCGCGACTGCATGGCC
TCTTATTCCTGTCTGTGCGAAGGCACAGAGCTGTGCGTGCGAAGCGAACG
TACCGTGACCACGTTTGTCGTGGAGGGCGCGGCGCCCGGCGGAAAGCAGT
ATTGCAACAGCGTACAGAAGACCATCACCGAAAACGTATTAATCGCCGGC
GCGCAAGTGCCGGTGATTCTGAGCGTGAACGACATGCCTCCGTACAATGC
AACGCATTGTCGGTGCGCAAAGAAGCAATCGGTGACTGGAGCGGCGAAAT
GTTTAGACGTTCTCCGCGCTTTGGGTGGTGTGAACTACGTCTGCACGGAG
AGAGATTGTAGGATCGGACCGGGTGAATACATTTGTGATGCGTTTGGAGA
CTCGTATTGCTCGCGCAGTTTTGTGGACAAGGTGCGTTTTGTGAAGGACA
GGGTGAAAGCAGACGAGGCTGGAGCGGTGTTCTGTCACCAAGAGGCGTAC
CAAGCAGAGAGCTTAGTTAAGATATTCTAA