Gcaud3256.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3256.t1
Unique NameGcaud3256.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length614
Homology
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A2V3IV77_9FLOR (Putative RNA-binding protein EIF1AD n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV77_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 5.090e-36
Identity = 83/163 (50.92%), Postives = 101/163 (61.96%), Query Frame = 0
Query:  444 MTAPGKRRQRVQLLSEQPTLLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEARSRIGGEIETIVLSTFLSSISKEEFWPERFRRAPEIDGREKTADSETIEKEEEE-----STDDDTEEGWNIGEGNPNRSGWEHQPSS 601
            MT PG RR+R QLLSE P L  GQ VAQI +ALGENTY+V L  G   L RLPKRLR VAYIRR SFVFVR+HAEAR R+ G+IE +VL  FL ++ KE FWP  F                 ++++E +     S+D   E+ W +G+GNPNR    H  SS
Sbjct:    1 MTTPGNRRRRTQLLSELPALKPGQQVAQITRALGENTYEVRLEGGHLQLVRLPKRLRDVAYIRRDSFVFVREHAEARGRVVGDIELVVLPAFLPALRKEHFWPAAFH-------------PHRLKRDEHDVPVHDSSDSAEEDDWQLGQGNPNRRMLSHMASS 150          
BLAST of Gcaud3256.t1 vs. uniprot
Match: R7QD95_CHOCR (S1-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD95_CHOCR)

HSP 1 Score: 113 bits (283), Expect = 1.130e-25
Identity = 76/170 (44.71%), Postives = 100/170 (58.82%), Query Frame = 0
Query:  450 RRQRVQLLSEQPTLLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEARS-RIGGEIETIVLSTFLSSISKEEFWPERFRRAPEIDGREKTADSETIEKE------EEESTDDDTEEGWNIGEGNPNRSGWEHQPSSSGESSSDEEDD 612
            RR+++Q LSE P L +GQ VA+++ A GEN Y+V    G  +LY+LPKR+R V +IRRGS+VFV+D    +  R+ G+IE +VL+ FL  ISKE +WP  F+   +      T D   I  E      EEE    D  E W IG GNPNR+ W+ Q       SSDEE D
Sbjct:    6 RRKQLQALSEPPVLEEGQKVARVIAACGENNYEVEDEHGAKTLYQLPKRMRHVVFIRRGSYVFVKDDETRKDGRVRGDIEVVVLTHFLHGISKEPYWPRSFKGEED-----NTEDMPAIVSEGAGGNSEEEPGHGD--EQWEIGSGNPNRAQWQDQ-------SSDEESD 161          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A1U8QRY5_EMENI (S1-like domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1U8QRY5_EMENI)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-6
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 0
Query:  463 LLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHA-EAR-SRIGGEIETIVLSTFLSSISKEEFWPERFRRAPEI 555
            L QGQ +A++++A G N Y V     +T+L  LP + R   +++RGSFV V  +A E R +++ GEI  IV      +  K  +WP+ F + P +
Sbjct:   22 LAQGQEIARVIKATGNNIYSVQFPSKKTALVELPAKFRSTIWMKRGSFVVVDTNALETRDNKLEGEIVNIVRDE--KAWRKTHYWPKEFVKQPVV 114          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A059JET0_TRIIM (S1-like domain-containing protein n=10 Tax=Arthrodermataceae TaxID=34384 RepID=A0A059JET0_TRIIM)

HSP 1 Score: 57.8 bits (138), Expect = 1.990e-6
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 0
Query:  448 GKRRQRVQLLSEQ----PTLLQ-GQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHA--EARSRIGGEIETIVLSTFLSSISKEEFWPERF 549
            GK R+++   +E+    PT L+ GQ +A++V+A G N Y V L    + L  LP R R   +++RG+FV V   A  E  +++ GEI  IV      +  K +FWP+ F
Sbjct:    2 GKPRRKMLATAEETLYPPTALEEGQSIARVVKATGNNVYSVELPSKESILVELPARFRSTIWMKRGTFVVVDSTALEERDNKLSGEIVNIVRDD--KAWRKADFWPKEF 108          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A4X3P758_PRIPA (Probable RNA-binding protein EIF1AD n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A4X3P758_PRIPA)

HSP 1 Score: 59.3 bits (142), Expect = 2.250e-6
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 0
Query:  444 MTAPGKRRQRVQLLSEQPTL-LQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEARSRIGGEIETIVLSTFLSSISKEEFWPERFRRAPEIDGRE 559
            M+   KRR  +  L  +  L ++G  +AQ+V A G N ++VL   G T L  +P + R+  +IR+G FV VR   E   ++  EIE ++ +  +  I ++  WP+RF    ++  RE
Sbjct:    1 MSVASKRRYMMNKLDYEMYLPVEGDSIAQVVGARGNNLHEVLEESGETYLVSMPSKFRKSVWIRKGQFVVVRPIEEG-DKVRAEIEHVLDAENVLYIREQNKWPQRFEAEAKLLTRE 116          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A1CBE5_ASPCL (Eukaryotic initiation factor 1A, putative n=1 Tax=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) TaxID=344612 RepID=A1CBE5_ASPCL)

HSP 1 Score: 57.0 bits (136), Expect = 4.040e-6
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  463 LLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHA-EAR-SRIGGEIETIVLSTFLSSISKEEFWPERFRRAP 553
            L +GQ +A++++A G N Y + L   +T L  LP R R   +++R S+V V  +A E R +++GGEI  IV      +  K  FWP+ F + P
Sbjct:   22 LAEGQEIARVIKATGNNVYLIELSSKKTMLVELPARFRSTIWMKRRSYVVVDMNALEGRDNKLGGEIINIVRDE--KAWRKAPFWPKEFVKQP 112          
BLAST of Gcaud3256.t1 vs. uniprot
Match: R7YGC9_CONA1 (S1-like domain-containing protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YGC9_CONA1)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-6
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0
Query:  462 TLLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEA--RSRIGGEIETIVLSTFLSSISKEEFWPERFRR 551
            TL +GQ +A++ +A G N Y V L  G+  L  LP R R   +I+RGS+V V   A A   +++ GEI  IV         K+ +WP +F +
Sbjct:   21 TLAEGQTLARVTKATGNNLYSVELPSGQPVLVELPARFRSTIWIKRGSYVLVDTGALADRENKLDGEIINIVRDE--KEWRKQSYWPAQFAK 110          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A4U0XJ46_9PEZI (S1-like domain-containing protein n=2 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4U0XJ46_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 5.260e-6
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 0
Query:  463 LLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEAR--SRIGGEIETIVLSTFLSSISKEEFWPERFRRAP 553
            L  GQ VA++V+A G N Y V L  GR+ L  LP R R   +I+RG ++ V  +A A   +++ GE+  +V         K  +WP  F + P
Sbjct:   22 LSDGQSVAKVVKAAGNNLYNVELPSGRSILVELPARFRSTIWIKRGGYLLVDTNALAARDNKLDGEVLNVVRDE--KQWRKMSYWPAEFAKKP 112          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A5N6TIP0_9EURO (Nucleic acid-binding protein n=1 Tax=Aspergillus avenaceus TaxID=36643 RepID=A0A5N6TIP0_9EURO)

HSP 1 Score: 56.2 bits (134), Expect = 7.010e-6
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  463 LLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHA-EAR-SRIGGEIETIVLSTFLSSISKEEFWPERFRRAP 553
            L QGQ +A++++A G N Y V L    T L  LP R R   +++RGS+V +  +A E R +++ GEI  IV      +  K  FWP++F + P
Sbjct:   22 LQQGQQIARVIKATGNNIYAVELPSKDTILVELPSRFRSTIWMKRGSYVVIDTNALEGRDNKLVGEIINIVRDE--KAWRKAPFWPKQFVKQP 112          
BLAST of Gcaud3256.t1 vs. uniprot
Match: A0A6A6QN46_9PEZI (Nucleic acid-binding protein n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6QN46_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-6
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0
Query:  457 LSEQPTLLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEA--RSRIGGEIETIVLSTFLSSISKEEFWPERFRR 551
            L+   TL +G+ +A+IV+A G N Y   L   +  L  LP R R   +I+RGSFV V   A A   +++ GEI  +V      +  K+++WP  F +
Sbjct:   16 LTPPDTLTEGESIARIVKAAGNNLYNAELPSSQAILVELPARFRSTIWIKRGSFVLVDTTALADRENKLDGEIINVVRDE--RAWRKQKYWPAEFAK 110          
The following BLAST results are available for this feature:
BLAST of Gcaud3256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2V3IV77_9FLOR5.090e-3650.92Putative RNA-binding protein EIF1AD n=1 Tax=Gracil... [more]
R7QD95_CHOCR1.130e-2544.71S1-like domain-containing protein n=1 Tax=Chondrus... [more]
A0A1U8QRY5_EMENI1.070e-635.79S1-like domain-containing protein n=3 Tax=Aspergil... [more]
A0A059JET0_TRIIM1.990e-635.78S1-like domain-containing protein n=10 Tax=Arthrod... [more]
A0A4X3P758_PRIPA2.250e-632.48Probable RNA-binding protein EIF1AD n=2 Tax=Pristi... [more]
A1CBE5_ASPCL4.040e-636.56Eukaryotic initiation factor 1A, putative n=1 Tax=... [more]
R7YGC9_CONA15.150e-636.96S1-like domain-containing protein n=1 Tax=Coniospo... [more]
A0A4U0XJ46_9PEZI5.260e-635.48S1-like domain-containing protein n=2 Tax=Cryomyce... [more]
A0A5N6TIP0_9EURO7.010e-637.63Nucleic acid-binding protein n=1 Tax=Aspergillus a... [more]
A0A6A6QN46_9PEZI7.170e-635.05Nucleic acid-binding protein n=2 Tax=Mytilinidiace... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 462..546
e-value: 5.7E-7
score: 39.2
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 466..519
e-value: 4.4E-8
score: 32.8
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 452..514
score: 10.727236
NoneNo IPR availableGENE3D2.40.50.140coord: 445..581
e-value: 5.6E-16
score: 60.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..583
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 555..613
IPR039294Probable RNA-binding protein EIF1ADPANTHERPTHR21641TRANSLATION INITIATION FACTOR-RELATEDcoord: 444..609
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 460..578

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_138_length_44555_cov_4.790842contigNODE_138_length_44555_cov_4.790842:26378..29274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3256.t1Gcaud3256.t1Gracilaria caudata M_176_S67 malemRNANODE_138_length_44555_cov_4.790842 26378..29274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3256.t1 ID=Gcaud3256.t1|Name=Gcaud3256.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=614bp
MTATSTLSARAFPSFAVLIQSRIEAPWLCPLLAPTKSTLESSPHSSVPST
LDSWIPDTLALSTNMADHNSFTPIRSRVPSLPFVDRESFAARSMSQTLGT
GPESPVLAPYVQEQYALLEQVLRKDDTSGPNLASETKIERSSDPIGSPLI
EEFYFSDIMTDAATTSHNVLQASLKTAERLYSHEADVSQKHISLSEPSID
LRSLDSAAAGTDLSSGLDSFCASNETETPSRGEQQQQPKVLGIFGERKNE
EGVDEYSVHPEAIRQFRAIFPFNTAPISRPVLSSERESGIEDDERKDQED
ESHGVLLTNKIDGSCGSRGHSPSSNISMTGPRIGSHPDLYENLSADMQAR
IDALARKIAAMPRRKLRESLSEGVTIEDVEPLMIVNRDELAGMLGLGVTT
WKMFGSSESPEEKKVISGGSKAEVREELYQEETSLNQTYGLLVMTAPGKR
RQRVQLLSEQPTLLQGQHVAQIVQALGENTYQVLLGDGRTSLYRLPKRLR
QVAYIRRGSFVFVRDHAEARSRIGGEIETIVLSTFLSSISKEEFWPERFR
RAPEIDGREKTADSETIEKEEEESTDDDTEEGWNIGEGNPNRSGWEHQPS
SSGESSSDEEDDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR039294EIF1AD
IPR012340NA-bd_OB-fold