Gcaud3195.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3195.t1
Unique NameGcaud3195.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length109
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud3195.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 41..64
e-value: 0.61
score: 19.1
coord: 72..95
e-value: 0.012
score: 24.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 72..95
e-value: 2.1E-4
score: 21.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 74..95
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..64
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..69
score: 8.725061
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 72..100
score: 11.572346
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 13..103
e-value: 1.5E-11
score: 46.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 41..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_80_length_55642_cov_4.475869contigNODE_80_length_55642_cov_4.475869:47098..47846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3195.t1Gcaud3195.t1Gracilaria caudata M_176_S67 malemRNANODE_80_length_55642_cov_4.475869 47098..47846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=109bp
MASTPAEEISMSTDQDPSFTSMSVSFPGDAAEVTKPRKGDIRCLKCDKTF
FTVEEMQKHDSESHLKARVRTFECPVCHLTFKDQSNANKHFRAVHEGKRR
GSADIAEI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf