|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 13616.ENSMODP00000007736 |
| Preferred name | GZF1 |
| PFAMs | BTB,zf-C2H2,zf-C2H2_6,zf-met |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K22402 |
| GOs | GO:0000122,GO:0000976,GO:0000977,GO:0000978,GO:0000980,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001158,GO:0001206,GO:0001227,GO:0001655,GO:0001657,GO:0001658,GO:0001763,GO:0001822,GO:0001823,GO:0002009,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003705,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035239,GO:0035295,GO:0035326,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060429,GO:0060562,GO:0060675,GO:0060993,GO:0061138,GO:0061326,GO:0061333,GO:0065007,GO:0070013,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072163,GO:0072164,GO:0072171,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 |
| Evalue | 3.44e-06 |
| EggNOG OGs | KOG1721@1|root,KOG1721@2759|Eukaryota,3904V@33154|Opisthokonta,3BGJU@33208|Metazoa,3D0VJ@33213|Bilateria,482VW@7711|Chordata,48V1U@7742|Vertebrata,3J6AV@40674|Mammalia,4K2W8@9263|Metatheria |
| Description | GDNF-inducible zinc finger protein 1 |
| COG category | K |
| BRITE | ko00000,ko03000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3195.t1.stop1 | Gcaud3195.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_80_length_55642_cov_4.475869 47098..47100 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3195.t1.start1 | Gcaud3195.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_80_length_55642_cov_4.475869 47844..47846 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=109bp
MASTPAEEISMSTDQDPSFTSMSVSFPGDAAEVTKPRKGDIRCLKCDKTF
FTVEEMQKHDSESHLKARVRTFECPVCHLTFKDQSNANKHFRAVHEGKRR
GSADIAEI* back to topspliced messenger RNA >Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:47098..47846- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTCGACTCCGGCTGAAGAGATAAGTATGAGCACCGATCAAGATCC
TTCGTTTACGTCAATGAGCGTCTCATTTCCCGGAGATGCTGCTGAAGTCA
CGAAGCCGAGGAAAGGCGACATAAGATGCTTGAAGTGCGACAAGACCTTC
TTCACTGTCGAAGAAATGCAAAAGCATGATAGCGAGTCACACTTGAAGGC
ACGAGTACGTACTTTCGAATGTCCTGTGTGTCACCTGACGTTCAAAGACC
AGTCAAACGCCAACAAACATTTCCGAGCAGTTCATGAAGGCAAAAGAAGA
GGTAGTGCGGATATTGCGGAAATTTAA back to topprotein sequence of Gcaud3195.t1 >Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=109bp
MASTPAEEISMSTDQDPSFTSMSVSFPGDAAEVTKPRKGDIRCLKCDKTF
FTVEEMQKHDSESHLKARVRTFECPVCHLTFKDQSNANKHFRAVHEGKRR
GSADIAEI* back to topmRNA from alignment at NODE_80_length_55642_cov_4.475869:47098..47846- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=749bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:47098..47846- (Gracilaria caudata M_176_S67 male)
ATGGCTTCGACTCCGGCTGAAGAGATAAGTATGAGCACCGATCAAGATCC
TTCGTTTACGTCAATGAGCGTCTCATTTCCCGGAGATGCTGCTGAAGTCA
CGAAGCCGAGGAAAGGCGACATAAGATGCTTGAAGTGCGACAAGACCTTC
TTCACTGTCGAAGAAATGCAAAAGGTAAGTCTTGCAAAGCACTTTTTCTA
CCTCAGCGGTAGTGCCAGTCTCGAACGAAGCTGACAAGCGAAACTTGTAT
GCATTGCACACAACCTATCGCACACCACCCATCGCAGCATGATAGCGAGT
CACACTTGAAGGCACGAGTACGTACTTTCGAATGTCCTGTGTGTCACCTG
ACGTTCAAAGACCAGTCAAACGCCAACAAACAGTAAGTAACACTTCGTGG
CATTGTTTCAAAATGACCAACTCTGACTTAGCCAAATATCGAACTAACTC
GATTATTCTTGACCTCTCCGTTGTCCATCGATTACGAAATGACATGCAGT
TTCCGAGCAGTTCATGAAGGCAAAAGAAGAGGTGTAGGTAAGTCAGGTCA
CGCGAAATCTATTCCAACGTTGGGTGCACGCAACTAACGTGAAATGAAAT
GGATGCAACTTGTCTTATGCTTCTTGGACCTTAGAGTGCGGATATTGCGG
TAAGCAGCTTTCCGGTCAAGAAAGCTTGGTGAGACATATGAAGAATATTC
ACCACAATATTCGAGACGTTCCGTGCCCCCACTGCGGCAGGAAATTTAA back to topCoding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:47098..47846- >Gcaud3195.t1 ID=Gcaud3195.t1|Name=Gcaud3195.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=327bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:47098..47846- (Gracilaria caudata M_176_S67 male)
ATGGCTTCGACTCCGGCTGAAGAGATAAGTATGAGCACCGATCAAGATCC
TTCGTTTACGTCAATGAGCGTCTCATTTCCCGGAGATGCTGCTGAAGTCA
CGAAGCCGAGGAAAGGCGACATAAGATGCTTGAAGTGCGACAAGACCTTC
TTCACTGTCGAAGAAATGCAAAAGCATGATAGCGAGTCACACTTGAAGGC
ACGAGTACGTACTTTCGAATGTCCTGTGTGTCACCTGACGTTCAAAGACC
AGTCAAACGCCAACAAACATTTCCGAGCAGTTCATGAAGGCAAAAGAAGA
GGTAGTGCGGATATTGCGGAAATTTAA back to top
|