Gcaud3177.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3177.t1
Unique NameGcaud3177.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length85
Homology
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A2V3J6F5_9FLOR (Chromatin structure-remodeling complex subunit snf21 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F5_9FLOR)

HSP 1 Score: 125 bits (315), Expect = 9.180e-32
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 MGVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            MGV++NPQ EQETQLTEEESLLIIRRLHQVLRPFLLRRMK+DVLRMGEQLPAKQEH+VLCEMSAWQ+Y+
Sbjct:  657 MGVERNPQMEQETQLTEEESLLIIRRLHQVLRPFLLRRMKADVLRMGEQLPAKQEHVVLCEMSAWQKYM 725          
BLAST of Gcaud3177.t1 vs. uniprot
Match: R7QQ29_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ29_CHOCR)

HSP 1 Score: 110 bits (275), Expect = 2.310e-26
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    1 MGVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            MGV     TEQ+ QLTEEESLLIIRRLHQVLRPFLLRRMK DVLRMGEQLP KQEHI+LCEMSAWQR++
Sbjct:  653 MGVGNISTTEQQAQLTEEESLLIIRRLHQVLRPFLLRRMKDDVLRMGEQLPEKQEHILLCEMSAWQRHM 721          
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A1X6PJ20_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ20_PORUM)

HSP 1 Score: 103 bits (256), Expect = 8.390e-24
Identity = 50/61 (81.97%), Postives = 59/61 (96.72%), Query Frame = 0
Query:    9 TEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            TE++ QLTEEESLLIIRRLHQVLRPFLLRR+KSDVLRMGEQLP+K EH++LC+MSAWQR++
Sbjct:  199 TEEQAQLTEEESLLIIRRLHQVLRPFLLRRLKSDVLRMGEQLPSKLEHVLLCDMSAWQRFM 259          
BLAST of Gcaud3177.t1 vs. uniprot
Match: M2XAC2_GALSU (Chromatin remodeling complex SWI/SNF component, Snf2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAC2_GALSU)

HSP 1 Score: 94.4 bits (233), Expect = 1.090e-20
Identity = 44/55 (80.00%), Postives = 53/55 (96.36%), Query Frame = 0
Query:   15 LTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            L+EEE+LLIIRRLHQVLRPFLLRR+KSDVLRMG+QLP KQEH++LCE+SAWQ+ +
Sbjct:  994 LSEEETLLIIRRLHQVLRPFLLRRLKSDVLRMGDQLPTKQEHVILCEISAWQKMV 1048          
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A5J4YP78_PORPP (Chromatin structure-remodeling complex subunit snf21 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP78_PORPP)

HSP 1 Score: 93.2 bits (230), Expect = 2.780e-20
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    2 GVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            G   N   ++  QLTEEE++L+I RLHQVLRPFLLRR+K++VL+MGEQLP+KQE ++LC+MSAWQRY+
Sbjct:  674 GGSGNNAADEHAQLTEEENMLVIFRLHQVLRPFLLRRLKAEVLKMGEQLPSKQEDVILCDMSAWQRYM 741          
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A7S0BRV0_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRV0_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 8.690e-20
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 0
Query:    7 PQTEQETQ--LTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQR--YIRLARE 74
            P+ EQ++   L+EEESLLIIRRLHQVL+PF+LRR+KSDVL+MGEQLP KQE I+LC+MSAWQ+  Y R+ ++
Sbjct:  188 PEGEQQSNQILSEEESLLIIRRLHQVLQPFVLRRLKSDVLKMGEQLPTKQEDIILCDMSAWQQHTYARILKQ 259          
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A7S3A431_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A431_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 1.800e-19
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0
Query:    7 PQTEQETQ--LTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQR--YIRLARE 74
            P+ EQ+    L+EEESLLIIRRLHQVL+PF+LRR+KSDVL+MGEQLP KQE I+LC+MSAWQ+  Y R+ ++
Sbjct:  602 PEGEQQANQILSEEESLLIIRRLHQVLQPFVLRRLKSDVLKMGEQLPTKQEDIILCDMSAWQQHTYARIVKQ 673          
BLAST of Gcaud3177.t1 vs. uniprot
Match: M1VGM5_CYAM1 (Chromatin remodeling complex SWI/SNF component, Snf2 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VGM5_CYAM1)

HSP 1 Score: 80.9 bits (198), Expect = 5.900e-16
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 0
Query:   14 QLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            +LTEEESLLII RLH+VLRPFLLRR+K+++LR GE+LP K+E + LC+MSAWQR +
Sbjct:  800 ELTEEESLLIINRLHKVLRPFLLRRLKNEILRGGEKLPEKREVLFLCDMSAWQRLV 855          
BLAST of Gcaud3177.t1 vs. uniprot
Match: A0A7J7IEL1_9RHOD (SWI SNF, matrix associated, actin dependent regulator of chromatin, sub a, member n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IEL1_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 3.830e-15
Identity = 37/59 (62.71%), Postives = 51/59 (86.44%), Query Frame = 0
Query:   11 QETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYI 69
            ++ + TEEE+LLII RLH+VLRPFLLRR+K+++LR GE+LP K+E + LC+MSAWQR +
Sbjct:  796 EQVEFTEEEALLIINRLHKVLRPFLLRRLKNEILRGGEKLPEKREVMFLCDMSAWQRLV 854          
BLAST of Gcaud3177.t1 vs. uniprot
Match: M2XUV6_GALSU (Chromatin remodeling complex / DNA-dep ATPase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XUV6_GALSU)

HSP 1 Score: 73.9 bits (180), Expect = 1.610e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0
Query:   14 QLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQLPAKQEHIVLCEMSAWQRYIRLARETSS 77
            +L EEE++LII RLHQVLRPFLLRRMKSDV     QLP K EH++ CE+SAWQ+   L R+ SS
Sbjct:  715 ELDEEETMLIINRLHQVLRPFLLRRMKSDV---ESQLPEKTEHVINCELSAWQKV--LYRQISS 773          
The following BLAST results are available for this feature:
BLAST of Gcaud3177.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6F5_9FLOR9.180e-3289.86Chromatin structure-remodeling complex subunit snf... [more]
R7QQ29_CHOCR2.310e-2682.61Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PJ20_PORUM8.390e-2481.97Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2XAC2_GALSU1.090e-2080.00Chromatin remodeling complex SWI/SNF component, Sn... [more]
A0A5J4YP78_PORPP2.780e-2064.71Chromatin structure-remodeling complex subunit snf... [more]
A0A7S0BRV0_9RHOD8.690e-2066.67Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A7S3A431_9RHOD1.800e-1966.67Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M1VGM5_CYAM15.900e-1669.64Chromatin remodeling complex SWI/SNF component, Sn... [more]
A0A7J7IEL1_9RHOD3.830e-1562.71SWI SNF, matrix associated, actin dependent regula... [more]
M2XUV6_GALSU1.610e-1364.06Chromatin remodeling complex / DNA-dep ATPase n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2, N-terminalPFAMPF00176SNF2-rel_domcoord: 18..67
e-value: 7.4E-9
score: 34.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 51..69
e-value: 8.5E-10
score: 39.7
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 17..50
e-value: 8.5E-10
score: 39.7
NoneNo IPR availablePANTHERPTHR10799SNF2/RAD54 HELICASE FAMILYcoord: 9..73
NoneNo IPR availablePANTHERPTHR10799:SF854ATP-DEPENDENT HELICASE BRMcoord: 9..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_115_length_48887_cov_4.567628contigNODE_115_length_48887_cov_4.567628:45661..46181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1Gcaud3177.t1Gracilaria caudata M_176_S67 malemRNANODE_115_length_48887_cov_4.567628 45661..46181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=85bp
MGVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQL
PAKQEHIVLCEMSAWQRYIRLARETSSVQEHSVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR027417P-loop_NTPase
IPR038718SNF2-like_sf