Gcaud3177.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3177.t1
Unique NameGcaud3177.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_115_length_48887_cov_4.567628contigNODE_115_length_48887_cov_4.567628:45661..46181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703337.1
PFAMsHelicase_C,SNF2_N
Max annot lvl2759|Eukaryota
KEGG koko:K11647,ko:K11786
KEGG Pathwayko04714,ko05225,map04714,map05225
Evalue2.6e-21
EggNOG OGsCOG0553@1|root,KOG0386@2759|Eukaryota
Descriptionaortic smooth muscle cell differentiation
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3177Gcaud3177Gracilaria caudata M_176_S67 malegeneNODE_115_length_48887_cov_4.567628 45661..46181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1Gcaud3177.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_115_length_48887_cov_4.567628 45661..46181 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1.start1Gcaud3177.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_115_length_48887_cov_4.567628 45661..45663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1.CDS1Gcaud3177.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_115_length_48887_cov_4.567628 45661..45866 +
Gcaud3177.t1.CDS2Gcaud3177.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_115_length_48887_cov_4.567628 46133..46181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1.exon1Gcaud3177.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_115_length_48887_cov_4.567628 45661..45866 +
Gcaud3177.t1.exon2Gcaud3177.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_115_length_48887_cov_4.567628 46133..46181 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1.intron1Gcaud3177.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_115_length_48887_cov_4.567628 45867..46132 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3177.t1.stop1Gcaud3177.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_115_length_48887_cov_4.567628 46179..46181 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=85bp
MGVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQL
PAKQEHIVLCEMSAWQRYIRLARETSSVQEHSVL*
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spliced messenger RNA

>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:45661..46181+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAGATAAGAATCCTCAAACTGAACAGGAAACGCAGCTTACCGA
GGAAGAGAGCCTGCTAATCATTCGTAGATTACACCAAGTATTGCGACCGT
TTCTTTTGCGACGAATGAAGTCAGACGTTCTTCGGATGGGTGAGCAACTT
CCTGCAAAACAGGAGCATATCGTGCTATGCGAAATGTCAGCATGGCAAAG
ATATATTAGACTTGCAAGAGAGACTTCTTCGGTACAGGAACATTCCGTTT
TATAG
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protein sequence of Gcaud3177.t1

>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=85bp
MGVDKNPQTEQETQLTEEESLLIIRRLHQVLRPFLLRRMKSDVLRMGEQL
PAKQEHIVLCEMSAWQRYIRLARETSSVQEHSVL*
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mRNA from alignment at NODE_115_length_48887_cov_4.567628:45661..46181+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=521bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:45661..46181+ (Gracilaria caudata M_176_S67 male)
ATGGGAGTAGATAAGAATCCTCAAACTGAACAGGAAACGCAGCTTACCGA
GGAAGAGAGCCTGCTAATCATTCGTAGATTACACCAAGTATTGCGACCGT
TTCTTTTGCGACGAATGAAGTCAGACGTTCTTCGGATGGGTGAGCAACTT
CCTGCAAAACAGGAGCATATCGTGCTATGCGAAATGTCAGCATGGCAAAG
ATATATGTACGTAAGGATCCTCAAAGCGGAACGTCTACTTTTTACGGACA
AGCATGGAAGGCAAAGGTATGATAAGCTCCCAAATCCAGCGGTGCAGATG
AGGAAGTGCTGTAATCACCCTTATCTATTTTACTCAGATCATTCAAGCCA
GGTTATTGATTCTCACATGCTTTGGAGAGCGTCTGGGAAATTTGACATGT
TAGACTCCATTATCACCAAGTTGCTGAGAACAGGGCATCGTATACTAATC
TTCAACCAAATGACTAAGGTAGTAGACTTGCAAGAGAGACTTCTTCGGTA
CAGGAACATTCCGTTTTATAG
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Coding sequence (CDS) from alignment at NODE_115_length_48887_cov_4.567628:45661..46181+

>Gcaud3177.t1 ID=Gcaud3177.t1|Name=Gcaud3177.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=255bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:45661..46181+ (Gracilaria caudata M_176_S67 male)
ATGGGAGTAGATAAGAATCCTCAAACTGAACAGGAAACGCAGCTTACCGA
GGAAGAGAGCCTGCTAATCATTCGTAGATTACACCAAGTATTGCGACCGT
TTCTTTTGCGACGAATGAAGTCAGACGTTCTTCGGATGGGTGAGCAACTT
CCTGCAAAACAGGAGCATATCGTGCTATGCGAAATGTCAGCATGGCAAAG
ATATATTAGACTTGCAAGAGAGACTTCTTCGGTACAGGAACATTCCGTTT
TATAG
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