Gcaud3082.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3082.t1
Unique NameGcaud3082.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length352
Homology
BLAST of Gcaud3082.t1 vs. uniprot
Match: A0A2V3IFG4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFG4_9FLOR)

HSP 1 Score: 231 bits (590), Expect = 5.880e-70
Identity = 147/342 (42.98%), Postives = 200/342 (58.48%), Query Frame = 0
Query:    1 MSRLICILIIALAYECSSGAPIAMMMGCGK-GKPLSPEKQSFCCEHFNLDCPTARAVDVDSVLAQSLESDKNSGDSEFKVHMRTLGERCKPPLFVCGVGLECKQGLCFRIKTRAHLKRLISRGRDVELEEKQQIRDGEDIEDKDPLPARKGLILEGQSLKLTDGERRTPLHSMTDSTNSVNKRTGMGVTDLE-----EDELAANIGDLLAKKMGIKLSSKQIHNVREVIAGTIDERAEREEQIDEAEGKAALPENETE--------TTESEKFTTPGIDTTSSSSSANEREENRSTSDNFPASSDSSLESEFRQLRADCGSHSDVHSERTEMQCPAKGSRRN 328
            M  ++  L+ AL  +C++G P++M+  CGK G  LS E++ FCCE F L+CP  +AV+ DSV+ Q + +  + G+ + KVH+R LGERCKPPL+VC VGL C QG CFR KT++HL+RL+ RG+++E E              DPL AR   IL GQS+K++D       HS+   T+      G+G  ++E     EDELAANIGDLL+K MG+KLSSKQIH+VREVIAGT DERAEREEQ+D AEG      NET         T +  + T   +++      A+E E       N       S E   R+ R  C +  +       MQCPA+ ++RN
Sbjct:    2 MVHVLSFLVAALVCKCATGVPMSMVTKCGKAGIVLSLEEERFCCEQFKLNCPLLKAVEADSVVEQIIRTGTD-GEDKLKVHVRNLGERCKPPLYVCAVGLHCMQGFCFRKKTKSHLRRLMERGKEIE-EXXXXXXXXXXXXXXDPLLARDDQILRGQSIKVSDNTNLK--HSLAAGTHGSVGIRGLGPNNIESSGMEEDELAANIGDLLSKTMGVKLSSKQIHDVREVIAGTFDERAEREEQVDAAEGILDAENNETAADSLENSVTRDKRRTTHAHLNSGKGDRMASENERGGRGGGNI------SHELAEREERRGCENMDESQERHQTMQCPARYAKRN 333          
BLAST of Gcaud3082.t1 vs. uniprot
Match: R7QG87_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG87_CHOCR)

HSP 1 Score: 157 bits (397), Expect = 7.690e-41
Identity = 114/334 (34.13%), Postives = 151/334 (45.21%), Query Frame = 0
Query:    9 IIALAYEC--SSGAPIAMMMGCGKGKPLSPEKQSFCCEHFNLDCPTARAVDVDSVLAQSLESDKNSGDSEFK-------VHMRTLGERCKPPLFVCGVGLECKQGLCFRIKTRAHLKRLISRGRDVELEEKQQIRDGEDIEDKDPLPARKGLILEGQSLKLTDGE-----------------------------RRTPLHSMTDSTNSVNKRTGMGVT--------------------------DLE-----------------------------------------EDELAANIGDLLAKKMGIKLSSKQIHNVREVIAGTIDERAEREEQI 237
            +I LAY C  + G PIA  MGCG G  L  EK+ FCCEHFNLDCP    +D +  L ++  +D     S++        V +RTLGERC      C VGL CK G C R +T+ HL+ L++RG+ VE EE+  +  G D+E  DPLPA+KGLIL+GQ++K    E                             RRTP      + +   K     VT                          DLE                                         EDELAANI D L  K+G+ L  K++H++RE+IAGT+DERAERE+++
Sbjct:    6 VICLAYLCRNAGGVPIARAMGCGTGTGLPLEKRVFCCEHFNLDCPQ---IDPNDSLWRNHMTDDTKSTSDYMNLHAHKLVQIRTLGERCVRKEDKCAVGLICKGGFCLRERTKHHLRDLMNRGKLVEQEERGHLDPGTDLEQSDPLPAQKGLILKGQAVKARASELSEDMDAAEVSDELENSEWQPPTRHISNPRRTPTPGRASTLSDERKMGSSLVTKSNPELIQNVAVHGQAVRASDFSSKDDLEDRQLSRDSFPKTPPSPQDENKKKGVLPKQKSPQSQDTQMEEEDELAANIADFLTTKLGVSLDFKEMHDIRELIAGTLDERAEREDEV 336          
The following BLAST results are available for this feature:
BLAST of Gcaud3082.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFG4_9FLOR5.880e-7042.98Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QG87_CHOCR7.690e-4134.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 223..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..332
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..351
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_143_length_44032_cov_4.581120contigNODE_143_length_44032_cov_4.581120:11677..12732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3082.t1Gcaud3082.t1Gracilaria caudata M_176_S67 malemRNANODE_143_length_44032_cov_4.581120 11677..12732 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
MSRLICILIIALAYECSSGAPIAMMMGCGKGKPLSPEKQSFCCEHFNLDC
PTARAVDVDSVLAQSLESDKNSGDSEFKVHMRTLGERCKPPLFVCGVGLE
CKQGLCFRIKTRAHLKRLISRGRDVELEEKQQIRDGEDIEDKDPLPARKG
LILEGQSLKLTDGERRTPLHSMTDSTNSVNKRTGMGVTDLEEDELAANIG
DLLAKKMGIKLSSKQIHNVREVIAGTIDERAEREEQIDEAEGKAALPENE
TETTESEKFTTPGIDTTSSSSSANEREENRSTSDNFPASSDSSLESEFRQ
LRADCGSHSDVHSERTEMQCPAKGSRRNIERSNTLVDIESTMVKEAGVLQ
N*
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