Gcaud3082.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3082.t1
Unique Name	Gcaud3082.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_143_length_44032_cov_4.581120	contig	NODE_143_length_44032_cov_4.581120:11677..12732 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3082	Gcaud3082	Gracilaria caudata M_176_S67 male	gene	NODE_143_length_44032_cov_4.581120 11677..12732 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3082.t1.stop1	Gcaud3082.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_143_length_44032_cov_4.581120 11677..11679 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3082.t1.CDS1	Gcaud3082.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_143_length_44032_cov_4.581120 11677..12732 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3082.t1.exon1	Gcaud3082.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_143_length_44032_cov_4.581120 11677..12732 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3082.t1.start1	Gcaud3082.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_143_length_44032_cov_4.581120 12730..12732 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3082.t1	Gcaud3082.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_143_length_44032_cov_4.581120 11677..12732 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_143_length_44032_cov_4.581120:11677..12732-
coding sequence from alignment at NODE_143_length_44032_cov_4.581120:11677..12732-

mRNA sequence

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
MSRLICILIIALAYECSSGAPIAMMMGCGKGKPLSPEKQSFCCEHFNLDC
PTARAVDVDSVLAQSLESDKNSGDSEFKVHMRTLGERCKPPLFVCGVGLE
CKQGLCFRIKTRAHLKRLISRGRDVELEEKQQIRDGEDIEDKDPLPARKG
LILEGQSLKLTDGERRTPLHSMTDSTNSVNKRTGMGVTDLEEDELAANIG
DLLAKKMGIKLSSKQIHNVREVIAGTIDERAEREEQIDEAEGKAALPENE
TETTESEKFTTPGIDTTSSSSSANEREENRSTSDNFPASSDSSLESEFRQ
LRADCGSHSDVHSERTEMQCPAKGSRRNIERSNTLVDIESTMVKEAGVLQ
N*

spliced messenger RNA

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:11677..12732- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGGCTTATCTGCATCTTGATTATTGCGCTGGCCTATGAATGTTC
ATCGGGCGCGCCTATCGCCATGATGATGGGCTGTGGAAAAGGGAAACCGT
TGTCGCCAGAGAAGCAGAGTTTTTGTTGCGAACATTTCAATCTCGACTGT
CCAACCGCCAGAGCAGTTGACGTGGATTCTGTGCTTGCACAGAGTTTGGA
AAGCGATAAGAACAGTGGTGATTCAGAATTCAAAGTCCACATGAGAACTC
TCGGCGAAAGGTGCAAACCCCCCTTGTTTGTCTGTGGGGTTGGTCTAGAA
TGTAAGCAGGGGCTATGCTTCCGAATCAAAACCAGGGCTCATCTCAAGCG
TCTCATAAGCCGAGGACGGGATGTCGAACTAGAAGAAAAGCAACAAATTC
GTGACGGTGAGGATATAGAAGATAAGGACCCGTTGCCTGCTCGTAAAGGT
CTCATTCTAGAAGGTCAATCTCTGAAACTCACTGATGGGGAAAGAAGAAC
TCCTCTTCATTCCATGACGGATAGCACCAACTCCGTAAACAAGAGAACTG
GGATGGGTGTAACAGATCTGGAAGAGGATGAACTAGCTGCGAATATTGGG
GACCTTCTCGCCAAGAAGATGGGTATTAAGTTGAGTTCAAAACAGATTCA
CAATGTCAGGGAGGTTATTGCTGGAACAATCGATGAAAGAGCGGAGCGTG
AAGAACAAATTGATGAAGCAGAGGGAAAAGCAGCACTTCCTGAGAACGAA
ACAGAGACCACGGAGTCCGAGAAGTTCACAACCCCGGGCATAGACACGAC
TTCTTCTTCTTCCTCTGCAAATGAGAGAGAGGAAAACAGGAGCACTAGCG
ATAACTTTCCAGCAAGTTCTGATTCTTCCCTAGAGTCTGAGTTTCGGCAA
CTCAGAGCAGATTGTGGATCTCATTCAGACGTACATAGTGAGCGAACCGA
AATGCAATGCCCTGCAAAAGGTTCAAGGAGAAATATCGAACGTTCAAATA
CACTTGTCGATATAGAAAGCACGATGGTGAAGGAGGCAGGTGTGCTACAA
AATTAA

protein sequence of Gcaud3082.t1

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
MSRLICILIIALAYECSSGAPIAMMMGCGKGKPLSPEKQSFCCEHFNLDC
PTARAVDVDSVLAQSLESDKNSGDSEFKVHMRTLGERCKPPLFVCGVGLE
CKQGLCFRIKTRAHLKRLISRGRDVELEEKQQIRDGEDIEDKDPLPARKG
LILEGQSLKLTDGERRTPLHSMTDSTNSVNKRTGMGVTDLEEDELAANIG
DLLAKKMGIKLSSKQIHNVREVIAGTIDERAEREEQIDEAEGKAALPENE
TETTESEKFTTPGIDTTSSSSSANEREENRSTSDNFPASSDSSLESEFRQ
LRADCGSHSDVHSERTEMQCPAKGSRRNIERSNTLVDIESTMVKEAGVLQ
N*

mRNA from alignment at NODE_143_length_44032_cov_4.581120:11677..12732-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:11677..12732- (Gracilaria caudata M_176_S67 male)
ATGAGTCGGCTTATCTGCATCTTGATTATTGCGCTGGCCTATGAATGTTC
ATCGGGCGCGCCTATCGCCATGATGATGGGCTGTGGAAAAGGGAAACCGT
TGTCGCCAGAGAAGCAGAGTTTTTGTTGCGAACATTTCAATCTCGACTGT
CCAACCGCCAGAGCAGTTGACGTGGATTCTGTGCTTGCACAGAGTTTGGA
AAGCGATAAGAACAGTGGTGATTCAGAATTCAAAGTCCACATGAGAACTC
TCGGCGAAAGGTGCAAACCCCCCTTGTTTGTCTGTGGGGTTGGTCTAGAA
TGTAAGCAGGGGCTATGCTTCCGAATCAAAACCAGGGCTCATCTCAAGCG
TCTCATAAGCCGAGGACGGGATGTCGAACTAGAAGAAAAGCAACAAATTC
GTGACGGTGAGGATATAGAAGATAAGGACCCGTTGCCTGCTCGTAAAGGT
CTCATTCTAGAAGGTCAATCTCTGAAACTCACTGATGGGGAAAGAAGAAC
TCCTCTTCATTCCATGACGGATAGCACCAACTCCGTAAACAAGAGAACTG
GGATGGGTGTAACAGATCTGGAAGAGGATGAACTAGCTGCGAATATTGGG
GACCTTCTCGCCAAGAAGATGGGTATTAAGTTGAGTTCAAAACAGATTCA
CAATGTCAGGGAGGTTATTGCTGGAACAATCGATGAAAGAGCGGAGCGTG
AAGAACAAATTGATGAAGCAGAGGGAAAAGCAGCACTTCCTGAGAACGAA
ACAGAGACCACGGAGTCCGAGAAGTTCACAACCCCGGGCATAGACACGAC
TTCTTCTTCTTCCTCTGCAAATGAGAGAGAGGAAAACAGGAGCACTAGCG
ATAACTTTCCAGCAAGTTCTGATTCTTCCCTAGAGTCTGAGTTTCGGCAA
CTCAGAGCAGATTGTGGATCTCATTCAGACGTACATAGTGAGCGAACCGA
AATGCAATGCCCTGCAAAAGGTTCAAGGAGAAATATCGAACGTTCAAATA
CACTTGTCGATATAGAAAGCACGATGGTGAAGGAGGCAGGTGTGCTACAA
AATTAA

Coding sequence (CDS) from alignment at NODE_143_length_44032_cov_4.581120:11677..12732-

>Gcaud3082.t1 ID=Gcaud3082.t1|Name=Gcaud3082.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1056bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:11677..12732- (Gracilaria caudata M_176_S67 male)
ATGAGTCGGCTTATCTGCATCTTGATTATTGCGCTGGCCTATGAATGTTC
ATCGGGCGCGCCTATCGCCATGATGATGGGCTGTGGAAAAGGGAAACCGT
TGTCGCCAGAGAAGCAGAGTTTTTGTTGCGAACATTTCAATCTCGACTGT
CCAACCGCCAGAGCAGTTGACGTGGATTCTGTGCTTGCACAGAGTTTGGA
AAGCGATAAGAACAGTGGTGATTCAGAATTCAAAGTCCACATGAGAACTC
TCGGCGAAAGGTGCAAACCCCCCTTGTTTGTCTGTGGGGTTGGTCTAGAA
TGTAAGCAGGGGCTATGCTTCCGAATCAAAACCAGGGCTCATCTCAAGCG
TCTCATAAGCCGAGGACGGGATGTCGAACTAGAAGAAAAGCAACAAATTC
GTGACGGTGAGGATATAGAAGATAAGGACCCGTTGCCTGCTCGTAAAGGT
CTCATTCTAGAAGGTCAATCTCTGAAACTCACTGATGGGGAAAGAAGAAC
TCCTCTTCATTCCATGACGGATAGCACCAACTCCGTAAACAAGAGAACTG
GGATGGGTGTAACAGATCTGGAAGAGGATGAACTAGCTGCGAATATTGGG
GACCTTCTCGCCAAGAAGATGGGTATTAAGTTGAGTTCAAAACAGATTCA
CAATGTCAGGGAGGTTATTGCTGGAACAATCGATGAAAGAGCGGAGCGTG
AAGAACAAATTGATGAAGCAGAGGGAAAAGCAGCACTTCCTGAGAACGAA
ACAGAGACCACGGAGTCCGAGAAGTTCACAACCCCGGGCATAGACACGAC
TTCTTCTTCTTCCTCTGCAAATGAGAGAGAGGAAAACAGGAGCACTAGCG
ATAACTTTCCAGCAAGTTCTGATTCTTCCCTAGAGTCTGAGTTTCGGCAA
CTCAGAGCAGATTGTGGATCTCATTCAGACGTACATAGTGAGCGAACCGA
AATGCAATGCCCTGCAAAAGGTTCAAGGAGAAATATCGAACGTTCAAATA
CACTTGTCGATATAGAAAGCACGATGGTGAAGGAGGCAGGTGTGCTACAA
AATTAA