Gcaud3017.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3017.t1
Unique NameGcaud3017.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length544
Homology
BLAST of Gcaud3017.t1 vs. uniprot
Match: A0A2V3II21_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II21_9FLOR)

HSP 1 Score: 143 bits (360), Expect = 1.170e-33
Identity = 138/496 (27.82%), Postives = 217/496 (43.75%), Query Frame = 0
Query:   49 IRVSSFQYPLWNEGLFSREWSHIVFFLFRMICIVIPVYLETRLEYKEQPVMVTRSLPNAFVITSK---VDPPFKEQVLFRNETSDFSNILNTCSYVDAEGWLIARLANVTYVQGERHVAYPQFEDDLSLDNLGNEAPLYDYGYSPADEFGDTSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFETTTFTF--NLMYQVFCLDGTEETLFRVIETESIRETDPYSRDPNVTLHLSPKIVDSFSTLSHLKI-NAIVSDVKGIECFIPVQTTWFQP-------EKKTNIY--------CHKKNGTYIDLYKTSVTVDVFREQNTTVVTPAEALVNIVPESLTTVLQFVAAMEFKEQIMLDAEFLAKQEPEREELDFSHNQLSQLYHDLGIHLYSKTENKSVTMAGDSVLERTILDNRIIIIGAIELSVIFLFGLGMQLCFTCYAHGIQRPNTVDGLSESWSRAVTPATASMESNR---IRLRLRKRIVRGVEKYVYE 520
            IRV S  YPLWNEGLF R+ SH++ FL R+ CIVIPVYLETR      P+ V + + NA+V       V P + EQ   RN       + + C+  D +GW+IA++ANVT V  +R         DL     G E  +Y         F ++S                              + +  TF +  NL  +V+                  R+  P+ R         P + D      +L++ N  V D K  +CF      W  P       +++  IY        C    G ++D Y TSV  D+  E NT ++     LV+     ++T  +F+ ++E+K +I+++A  L+     R +  F      Q    +   LYS+  N +V + GD       LD  +I++GA+E+ V+ + GL + +        +QR NTV+GLS  W+   +     + S +   I LRL++ I  G E+++Y+
Sbjct:    5 IRVRSIPYPLWNEGLFHRQPSHLLLFLIRIACIVIPVYLETRFISHSNPIPVKKLIRNAYVSQPNYHDVHPLWSEQRDPRNVVLLPEEVFHRCAARDDDGWVIAKIANVTLVGKDR---------DLIHCVKGTEQAVY-RTVEKTPHFVESS-------------------------VVVNDQSKEKTFVYQPNLTLEVW------------------RDEGPFKR-----FSPWPSVEDDDPNRQYLQVKNVTVLDTKDFQCFF-----WRAPVAEGHAFDREDRIYEYVLDSFVCQNVTGNFVDFYFTSVQ-DLANESNTRILEQGGNLVS-KQSIVSTTFEFIGSLEYKNEIIINAGHLS-----RHQFRFPPTTRFQFLLMIRAILYSRASNVTVEVPGDEKTRSVELDVVVIVVGAMEVIVVLVLGLTLAVISRYKWDDMQRANTVEGLSHIWAMTQSRTWWDLSSKKNGPISLRLKRYICDGKERFMYD 430          
BLAST of Gcaud3017.t1 vs. uniprot
Match: A0A2V3II28_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II28_9FLOR)

HSP 1 Score: 129 bits (325), Expect = 9.590e-29
Identity = 140/529 (26.47%), Postives = 233/529 (44.05%), Query Frame = 0
Query:    1 MIELPFGNGITAAIVFFVFELVLIPILIDSTSRAASFFVHWRAKKDMHIRVSSFQYPLWNEGLFSREWSHIVFFLFRMICIVIPVYLETRLEYKEQPVMVTRSLPNAFVITSKVDPPFKEQVLFRNETSDFSNI-LNT---CSYVDAEGWLIARLANVTYVQGERHVAYPQFEDDLSLDNLGN-EAPLYDYGYSPADEFGDTSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFETTTFTFNLMYQVFCLDGTEETLFRVIE-TESIRETDPYSRDPNVTLHLSPKIVDSFSTLSHLKINAIVSDVKGIECFIP--VQTTWFQ-----PEKKTNIYCHKKNGTYIDLYKTSVTVDVFREQNTTVVTPAE----ALVNIVPESLTTVLQFV--AAMEFKEQIMLDAEFLAKQEPEREELDFSHNQLSQLYHDLGIHLYSKTENKSVTMAGDSVLERTILDNRIIIIGAIELSVIFLFGLGMQLCFTCYAHGIQRPNTVDGLSESW--SRAVTPATASMESNRIRLRLRK 508
            M+ +PF +G+ +A++F  FE+++ P+L  STS  AS F++  A+K   + +   ++PLW+EGL   + SH      R++ I IPVYLET LE +E+P MV+R++ +AFV     D  +  Q+             LNT   C+ VD +GW+ A++AN TY+Q   H A+        +  + N E P+Y    +   ++G                                          N+      +  TE    RV +  +++   D + R+       +P    +F    H   NA+  +   ++C+ P  V+T + +     P      +C K+    +  Y   V +D     N +  T       +   +   + TTVL+ V   + +FK++++L A+ LA   P+ +      + ++Q        LYSK  N +V       L RT ++ R III   E+ V+ LF L +          IQ+PNTV GLS  W  S+       + E   I+LRLR+
Sbjct:    1 MVVVPFSSGVVSALLFLAFEIIVFPLLFYSTSILASLFLYRNARKGNDVVIDKMKFPLWSEGLSRHQTSHYSLLAIRIVLIAIPVYLETTLESREEPEMVSRTVTHAFV-PQPTDDWYTYQIRSGEHIDSLRRTGLNTFLACTSVDEKGWVWAKVANFTYIQ--EHDAH-------QIRCVSNTEQPIYSLTEATV-KYGPG----------------------------------------NVQLLKMSVSWTEG---RVADFPQALVLKDRFGRE-------APPGETAFRV--H---NAVALNDTAVKCYFPQTVRTRFSKSRNGHPHTAWRGWCQKEEPIGVAFYSLLVNMDQLPMHNLSYETRERGRCGSSCKLRSRNATTVLEIVYRGSFQFKDKVLLGAKHLANYIPDYDS-SLRASDIAQCI------LYSKASNVTVLTLSGRTLPRTEIEGRAIIIAISEIVVVLLFALMLSCARLSKWGHIQQPNTVSGLSNCWAESQKALSHQRTKEGKWIKLRLRR 456          
The following BLAST results are available for this feature:
BLAST of Gcaud3017.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II21_9FLOR1.170e-3327.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3II28_9FLOR9.590e-2926.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..87
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 465..543
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 444..464
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..443
NoneNo IPR availableTMHMMTMhelixcoord: 444..466
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_117_length_47832_cov_4.546323contigNODE_117_length_47832_cov_4.546323:39907..41538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3017.t1Gcaud3017.t1Gracilaria caudata M_176_S67 malemRNANODE_117_length_47832_cov_4.546323 39907..41538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=544bp
MIELPFGNGITAAIVFFVFELVLIPILIDSTSRAASFFVHWRAKKDMHIR
VSSFQYPLWNEGLFSREWSHIVFFLFRMICIVIPVYLETRLEYKEQPVMV
TRSLPNAFVITSKVDPPFKEQVLFRNETSDFSNILNTCSYVDAEGWLIAR
LANVTYVQGERHVAYPQFEDDLSLDNLGNEAPLYDYGYSPADEFGDTSSF
DELGDGSSFEELAENAPFGEIGNNSSFNEFETTTFTFNLMYQVFCLDGTE
ETLFRVIETESIRETDPYSRDPNVTLHLSPKIVDSFSTLSHLKINAIVSD
VKGIECFIPVQTTWFQPEKKTNIYCHKKNGTYIDLYKTSVTVDVFREQNT
TVVTPAEALVNIVPESLTTVLQFVAAMEFKEQIMLDAEFLAKQEPEREEL
DFSHNQLSQLYHDLGIHLYSKTENKSVTMAGDSVLERTILDNRIIIIGAI
ELSVIFLFGLGMQLCFTCYAHGIQRPNTVDGLSESWSRAVTPATASMESN
RIRLRLRKRIVRGVEKYVYEPATTNDHEERHKECVMHCDQGEC*
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