Gcaud3017.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3017.t1
Unique Name	Gcaud3017.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_117_length_47832_cov_4.546323	contig	NODE_117_length_47832_cov_4.546323:39907..41538 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3017	Gcaud3017	Gracilaria caudata M_176_S67 male	gene	NODE_117_length_47832_cov_4.546323 39907..41538 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3017.t1.stop1	Gcaud3017.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_117_length_47832_cov_4.546323 39907..39909 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3017.t1.CDS1	Gcaud3017.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_117_length_47832_cov_4.546323 39907..41538 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3017.t1.exon1	Gcaud3017.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_117_length_47832_cov_4.546323 39907..41538 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3017.t1.start1	Gcaud3017.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_117_length_47832_cov_4.546323 41536..41538 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3017.t1	Gcaud3017.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_117_length_47832_cov_4.546323 39907..41538 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_117_length_47832_cov_4.546323:39907..41538-
coding sequence from alignment at NODE_117_length_47832_cov_4.546323:39907..41538-

mRNA sequence

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=544bp
MIELPFGNGITAAIVFFVFELVLIPILIDSTSRAASFFVHWRAKKDMHIR
VSSFQYPLWNEGLFSREWSHIVFFLFRMICIVIPVYLETRLEYKEQPVMV
TRSLPNAFVITSKVDPPFKEQVLFRNETSDFSNILNTCSYVDAEGWLIAR
LANVTYVQGERHVAYPQFEDDLSLDNLGNEAPLYDYGYSPADEFGDTSSF
DELGDGSSFEELAENAPFGEIGNNSSFNEFETTTFTFNLMYQVFCLDGTE
ETLFRVIETESIRETDPYSRDPNVTLHLSPKIVDSFSTLSHLKINAIVSD
VKGIECFIPVQTTWFQPEKKTNIYCHKKNGTYIDLYKTSVTVDVFREQNT
TVVTPAEALVNIVPESLTTVLQFVAAMEFKEQIMLDAEFLAKQEPEREEL
DFSHNQLSQLYHDLGIHLYSKTENKSVTMAGDSVLERTILDNRIIIIGAI
ELSVIFLFGLGMQLCFTCYAHGIQRPNTVDGLSESWSRAVTPATASMESN
RIRLRLRKRIVRGVEKYVYEPATTNDHEERHKECVMHCDQGEC*

spliced messenger RNA

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:39907..41538- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAACTACCGTTTGGAAACGGCATCACTGCAGCGATAGTGTTTTT
CGTATTCGAACTCGTTCTCATTCCTATTCTGATCGATTCTACATCAAGAG
CTGCTTCATTTTTTGTACATTGGCGAGCTAAAAAGGACATGCACATACGA
GTTTCGTCATTTCAATATCCTCTTTGGAACGAAGGTCTTTTTAGTCGTGA
ATGGTCGCATATAGTGTTCTTTCTCTTCCGAATGATATGCATTGTCATTC
CTGTTTACCTTGAGACAAGACTCGAATATAAGGAGCAACCTGTCATGGTG
ACAAGAAGTCTTCCAAACGCTTTTGTAATCACATCCAAAGTCGATCCGCC
ATTCAAAGAACAGGTGTTGTTTCGAAATGAAACCTCTGACTTCTCCAACA
TTCTCAATACTTGTTCATATGTAGATGCAGAGGGATGGCTCATTGCAAGG
CTGGCTAATGTTACATATGTACAGGGTGAGAGACACGTCGCTTATCCGCA
ATTTGAAGATGATCTTTCTCTTGATAATCTCGGAAATGAAGCTCCGCTTT
ACGATTATGGATATAGTCCTGCTGACGAGTTTGGAGATACTTCCTCGTTT
GATGAGCTTGGAGATGGTTCTTCTTTTGAGGAATTAGCAGAGAATGCTCC
TTTTGGAGAGATTGGAAATAATTCGTCCTTCAACGAGTTTGAAACTACTA
CTTTTACTTTCAATCTCATGTATCAGGTTTTTTGCCTCGATGGAACCGAG
GAAACCCTTTTTCGAGTCATAGAAACCGAAAGCATAAGGGAAACTGACCC
ATATTCCCGTGATCCAAATGTCACTTTGCATCTTTCGCCAAAGATCGTGG
ACTCGTTTTCTACACTGAGTCATTTGAAGATCAATGCGATCGTATCGGAT
GTAAAGGGTATAGAGTGCTTTATTCCCGTGCAGACAACTTGGTTTCAGCC
GGAAAAGAAGACAAACATATATTGTCACAAAAAGAATGGAACATATATCG
ACTTGTACAAAACCTCGGTGACTGTTGATGTGTTTCGAGAGCAAAATACA
ACTGTTGTCACGCCCGCTGAAGCACTTGTGAATATTGTGCCAGAATCTTT
AACGACCGTGCTACAGTTTGTGGCAGCAATGGAATTTAAGGAGCAGATAA
TGCTGGATGCCGAATTTCTAGCCAAACAAGAACCAGAGAGGGAAGAACTG
GATTTTTCTCATAATCAATTGTCCCAACTTTATCATGATCTCGGGATACA
TTTGTATTCCAAAACAGAAAATAAATCGGTCACTATGGCAGGAGACTCCG
TGCTTGAACGCACGATACTGGATAATAGGATCATCATCATTGGTGCGATA
GAACTGAGTGTTATTTTTCTTTTCGGACTCGGAATGCAGCTGTGCTTCAC
CTGTTATGCGCATGGGATCCAGAGACCAAATACAGTGGACGGGCTGTCCG
AAAGTTGGTCAAGAGCTGTTACTCCAGCAACAGCATCAATGGAAAGCAAC
CGCATTAGATTGAGGTTGAGGAAAAGGATTGTAAGAGGGGTTGAGAAGTA
TGTATATGAGCCAGCAACTACTAACGATCATGAAGAACGTCACAAGGAAT
GTGTAATGCACTGTGACCAGGGCGAGTGTTGA

protein sequence of Gcaud3017.t1

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=544bp
MIELPFGNGITAAIVFFVFELVLIPILIDSTSRAASFFVHWRAKKDMHIR
VSSFQYPLWNEGLFSREWSHIVFFLFRMICIVIPVYLETRLEYKEQPVMV
TRSLPNAFVITSKVDPPFKEQVLFRNETSDFSNILNTCSYVDAEGWLIAR
LANVTYVQGERHVAYPQFEDDLSLDNLGNEAPLYDYGYSPADEFGDTSSF
DELGDGSSFEELAENAPFGEIGNNSSFNEFETTTFTFNLMYQVFCLDGTE
ETLFRVIETESIRETDPYSRDPNVTLHLSPKIVDSFSTLSHLKINAIVSD
VKGIECFIPVQTTWFQPEKKTNIYCHKKNGTYIDLYKTSVTVDVFREQNT
TVVTPAEALVNIVPESLTTVLQFVAAMEFKEQIMLDAEFLAKQEPEREEL
DFSHNQLSQLYHDLGIHLYSKTENKSVTMAGDSVLERTILDNRIIIIGAI
ELSVIFLFGLGMQLCFTCYAHGIQRPNTVDGLSESWSRAVTPATASMESN
RIRLRLRKRIVRGVEKYVYEPATTNDHEERHKECVMHCDQGEC*

mRNA from alignment at NODE_117_length_47832_cov_4.546323:39907..41538-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:39907..41538- (Gracilaria caudata M_176_S67 male)
ATGATCGAACTACCGTTTGGAAACGGCATCACTGCAGCGATAGTGTTTTT
CGTATTCGAACTCGTTCTCATTCCTATTCTGATCGATTCTACATCAAGAG
CTGCTTCATTTTTTGTACATTGGCGAGCTAAAAAGGACATGCACATACGA
GTTTCGTCATTTCAATATCCTCTTTGGAACGAAGGTCTTTTTAGTCGTGA
ATGGTCGCATATAGTGTTCTTTCTCTTCCGAATGATATGCATTGTCATTC
CTGTTTACCTTGAGACAAGACTCGAATATAAGGAGCAACCTGTCATGGTG
ACAAGAAGTCTTCCAAACGCTTTTGTAATCACATCCAAAGTCGATCCGCC
ATTCAAAGAACAGGTGTTGTTTCGAAATGAAACCTCTGACTTCTCCAACA
TTCTCAATACTTGTTCATATGTAGATGCAGAGGGATGGCTCATTGCAAGG
CTGGCTAATGTTACATATGTACAGGGTGAGAGACACGTCGCTTATCCGCA
ATTTGAAGATGATCTTTCTCTTGATAATCTCGGAAATGAAGCTCCGCTTT
ACGATTATGGATATAGTCCTGCTGACGAGTTTGGAGATACTTCCTCGTTT
GATGAGCTTGGAGATGGTTCTTCTTTTGAGGAATTAGCAGAGAATGCTCC
TTTTGGAGAGATTGGAAATAATTCGTCCTTCAACGAGTTTGAAACTACTA
CTTTTACTTTCAATCTCATGTATCAGGTTTTTTGCCTCGATGGAACCGAG
GAAACCCTTTTTCGAGTCATAGAAACCGAAAGCATAAGGGAAACTGACCC
ATATTCCCGTGATCCAAATGTCACTTTGCATCTTTCGCCAAAGATCGTGG
ACTCGTTTTCTACACTGAGTCATTTGAAGATCAATGCGATCGTATCGGAT
GTAAAGGGTATAGAGTGCTTTATTCCCGTGCAGACAACTTGGTTTCAGCC
GGAAAAGAAGACAAACATATATTGTCACAAAAAGAATGGAACATATATCG
ACTTGTACAAAACCTCGGTGACTGTTGATGTGTTTCGAGAGCAAAATACA
ACTGTTGTCACGCCCGCTGAAGCACTTGTGAATATTGTGCCAGAATCTTT
AACGACCGTGCTACAGTTTGTGGCAGCAATGGAATTTAAGGAGCAGATAA
TGCTGGATGCCGAATTTCTAGCCAAACAAGAACCAGAGAGGGAAGAACTG
GATTTTTCTCATAATCAATTGTCCCAACTTTATCATGATCTCGGGATACA
TTTGTATTCCAAAACAGAAAATAAATCGGTCACTATGGCAGGAGACTCCG
TGCTTGAACGCACGATACTGGATAATAGGATCATCATCATTGGTGCGATA
GAACTGAGTGTTATTTTTCTTTTCGGACTCGGAATGCAGCTGTGCTTCAC
CTGTTATGCGCATGGGATCCAGAGACCAAATACAGTGGACGGGCTGTCCG
AAAGTTGGTCAAGAGCTGTTACTCCAGCAACAGCATCAATGGAAAGCAAC
CGCATTAGATTGAGGTTGAGGAAAAGGATTGTAAGAGGGGTTGAGAAGTA
TGTATATGAGCCAGCAACTACTAACGATCATGAAGAACGTCACAAGGAAT
GTGTAATGCACTGTGACCAGGGCGAGTGTTGA

Coding sequence (CDS) from alignment at NODE_117_length_47832_cov_4.546323:39907..41538-

>Gcaud3017.t1 ID=Gcaud3017.t1|Name=Gcaud3017.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1632bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:39907..41538- (Gracilaria caudata M_176_S67 male)
ATGATCGAACTACCGTTTGGAAACGGCATCACTGCAGCGATAGTGTTTTT
CGTATTCGAACTCGTTCTCATTCCTATTCTGATCGATTCTACATCAAGAG
CTGCTTCATTTTTTGTACATTGGCGAGCTAAAAAGGACATGCACATACGA
GTTTCGTCATTTCAATATCCTCTTTGGAACGAAGGTCTTTTTAGTCGTGA
ATGGTCGCATATAGTGTTCTTTCTCTTCCGAATGATATGCATTGTCATTC
CTGTTTACCTTGAGACAAGACTCGAATATAAGGAGCAACCTGTCATGGTG
ACAAGAAGTCTTCCAAACGCTTTTGTAATCACATCCAAAGTCGATCCGCC
ATTCAAAGAACAGGTGTTGTTTCGAAATGAAACCTCTGACTTCTCCAACA
TTCTCAATACTTGTTCATATGTAGATGCAGAGGGATGGCTCATTGCAAGG
CTGGCTAATGTTACATATGTACAGGGTGAGAGACACGTCGCTTATCCGCA
ATTTGAAGATGATCTTTCTCTTGATAATCTCGGAAATGAAGCTCCGCTTT
ACGATTATGGATATAGTCCTGCTGACGAGTTTGGAGATACTTCCTCGTTT
GATGAGCTTGGAGATGGTTCTTCTTTTGAGGAATTAGCAGAGAATGCTCC
TTTTGGAGAGATTGGAAATAATTCGTCCTTCAACGAGTTTGAAACTACTA
CTTTTACTTTCAATCTCATGTATCAGGTTTTTTGCCTCGATGGAACCGAG
GAAACCCTTTTTCGAGTCATAGAAACCGAAAGCATAAGGGAAACTGACCC
ATATTCCCGTGATCCAAATGTCACTTTGCATCTTTCGCCAAAGATCGTGG
ACTCGTTTTCTACACTGAGTCATTTGAAGATCAATGCGATCGTATCGGAT
GTAAAGGGTATAGAGTGCTTTATTCCCGTGCAGACAACTTGGTTTCAGCC
GGAAAAGAAGACAAACATATATTGTCACAAAAAGAATGGAACATATATCG
ACTTGTACAAAACCTCGGTGACTGTTGATGTGTTTCGAGAGCAAAATACA
ACTGTTGTCACGCCCGCTGAAGCACTTGTGAATATTGTGCCAGAATCTTT
AACGACCGTGCTACAGTTTGTGGCAGCAATGGAATTTAAGGAGCAGATAA
TGCTGGATGCCGAATTTCTAGCCAAACAAGAACCAGAGAGGGAAGAACTG
GATTTTTCTCATAATCAATTGTCCCAACTTTATCATGATCTCGGGATACA
TTTGTATTCCAAAACAGAAAATAAATCGGTCACTATGGCAGGAGACTCCG
TGCTTGAACGCACGATACTGGATAATAGGATCATCATCATTGGTGCGATA
GAACTGAGTGTTATTTTTCTTTTCGGACTCGGAATGCAGCTGTGCTTCAC
CTGTTATGCGCATGGGATCCAGAGACCAAATACAGTGGACGGGCTGTCCG
AAAGTTGGTCAAGAGCTGTTACTCCAGCAACAGCATCAATGGAAAGCAAC
CGCATTAGATTGAGGTTGAGGAAAAGGATTGTAAGAGGGGTTGAGAAGTA
TGTATATGAGCCAGCAACTACTAACGATCATGAAGAACGTCACAAGGAAT
GTGTAATGCACTGTGACCAGGGCGAGTGTTGA