Gcaud297.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud297.t1
Unique NameGcaud297.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length406
Homology
BLAST of Gcaud297.t1 vs. uniprot
Match: A0A2V3IQH1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQH1_9FLOR)

HSP 1 Score: 135 bits (341), Expect = 1.900e-32
Identity = 110/394 (27.92%), Postives = 191/394 (48.48%), Query Frame = 0
Query:    8 LNVSQYIQPGRGSLHRSFLDYDFFRNSSILNSIASTIAVIGLNAMLLQLIFLLGGLTTHSAALSAMLQGSLFSDCVTNLFSRKAKSEHMACKTILRLRLKAVLLVSFAFGADSVLTFIQTSRNNIVSSKDLSLVRLGLDLYEGESKFANPEQDRVPLINASREVSHRYISICITHGGAPSAAFLESGPDFLGIMVDYLFDRKMNIKLITSDMVHTLGIEITLHLTSN-EEGTAAFNITKLHHDPSQVALWLMRRVADLYTCEEITEALDLPAMYSSMSCSFNKSSEVAKMSFSLFLGALSLSPEPYSEDDFLTLRASSISNWTSYPSPSGRRALLQFARYDRSRVDGGVLWILAALLVLFALRAGFYSLDYELAKDLAVAEQLEMGSIPIHASS 400
            L ++Q+ +PG+GSL  +   YD    SSIL+ +AS I ++   A++ Q I  + GL+TH   + +M +G +F   + +  + ++KS        + L+L  V+L+ F+ G +++L +  +S     S + L + RL  DLY GE++FA      V +++A   + +  I++C     A  A    + P+ + I+   +      + ++    +HTL I   L  + + E G    N   +    ++ ALWL +R   L+ C +    L +  + S    +  +S +V +  ++LFL  L L    Y+  DF  + + S     S P       L  +ARY + R+ G  LWI A +LVL  +     S D   AKD A+AE L + S PI + +
Sbjct:    6 LRLTQFFEPGKGSLRSALPTYDLSL-SSILDPVASAIIILFFTALVGQSIAFVWGLSTHGILMKSMYEG-MFPVSLLSSTTVQSKSRAPFKVRSVTLKLLLVVLLLFSLGLEALLFYAVSSTTISYSLEKLGVRRLKSDLYHGENRFAKLPTTCVEMVHARESLVYTPITLCALQSSA--AMSFSTYPNEISIIFG-MTAHIPELSILRDGQLHTLQISTVLQASESFEVGLIRLNGLTIFPKRNETALWLAQRAMTLFNCSKDLTHLSVENVSSYHLTNCVESRDVEETLYALFLSTLELDSRTYTSKDFRYIFSDS-----STPIDD---ILNTYARYTKQRIPGSALWITAIVLVLLHVVVSICSEDLNFAKDTAIAEFLGLTSTPIESGN 386          
BLAST of Gcaud297.t1 vs. uniprot
Match: A0A2V3IMY0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMY0_9FLOR)

HSP 1 Score: 92.0 bits (227), Expect = 6.990e-18
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 0
Query:    8 LNVSQYIQPGRGSLHRSFLDYDFFRNSSILNSIASTIAVIGLNAMLLQLIFLLGGLTTHSAALSAMLQGSLFSDCVTNLFSRKAKSEHMACKTILRLRLKAVLLVSFAFGADSVLTFIQTSRNNIV 133
            + ++Q++Q G G L RSFLDY     +S L+SI +T+ +I L+A+++ ++FL GGL THSAALS+M++G   SDC+     R ++ +    +  +RL++    LVS  F  D +LT  QT+R  IV
Sbjct:    7 IELTQFMQAGSGPLRRSFLDYSRLSFASELDSIGATVCIIALSALIVNVMFLFGGLCTHSAALSSMVRGCFISDCLIKTLFRGSECKRADYRRNVRLKVLGAFLVSSVFVMDVLLTLSQTTRCEIV 132          
The following BLAST results are available for this feature:
BLAST of Gcaud297.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQH1_9FLOR1.900e-3227.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMY0_9FLOR6.990e-1840.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..125
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 126..353
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 373..405
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..372
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..66
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..107
NoneNo IPR availableTMHMMTMhelixcoord: 353..375
NoneNo IPR availableTMHMMTMhelixcoord: 41..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_269_length_32912_cov_5.373328contigNODE_269_length_32912_cov_5.373328:4990..6207 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud297.t1Gcaud297.t1Gracilaria caudata M_176_S67 malemRNANODE_269_length_32912_cov_5.373328 4990..6207 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=406bp
MAAHFVPLNVSQYIQPGRGSLHRSFLDYDFFRNSSILNSIASTIAVIGLN
AMLLQLIFLLGGLTTHSAALSAMLQGSLFSDCVTNLFSRKAKSEHMACKT
ILRLRLKAVLLVSFAFGADSVLTFIQTSRNNIVSSKDLSLVRLGLDLYEG
ESKFANPEQDRVPLINASREVSHRYISICITHGGAPSAAFLESGPDFLGI
MVDYLFDRKMNIKLITSDMVHTLGIEITLHLTSNEEGTAAFNITKLHHDP
SQVALWLMRRVADLYTCEEITEALDLPAMYSSMSCSFNKSSEVAKMSFSL
FLGALSLSPEPYSEDDFLTLRASSISNWTSYPSPSGRRALLQFARYDRSR
VDGGVLWILAALLVLFALRAGFYSLDYELAKDLAVAEQLEMGSIPIHASS
HSILP*
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