Gcaud297.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud297.t1
Unique Name	Gcaud297.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_269_length_32912_cov_5.373328	contig	NODE_269_length_32912_cov_5.373328:4990..6207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud297	Gcaud297	Gracilaria caudata M_176_S67 male	gene	NODE_269_length_32912_cov_5.373328 4990..6207 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud297.t1.start1	Gcaud297.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_269_length_32912_cov_5.373328 4990..4992 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud297.t1.CDS1	Gcaud297.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_269_length_32912_cov_5.373328 4990..6207 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud297.t1.exon1	Gcaud297.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_269_length_32912_cov_5.373328 4990..6207 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud297.t1.stop1	Gcaud297.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_269_length_32912_cov_5.373328 6205..6207 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud297.t1	Gcaud297.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_269_length_32912_cov_5.373328 4990..6207 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+
coding sequence from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+

mRNA sequence

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=406bp
MAAHFVPLNVSQYIQPGRGSLHRSFLDYDFFRNSSILNSIASTIAVIGLN
AMLLQLIFLLGGLTTHSAALSAMLQGSLFSDCVTNLFSRKAKSEHMACKT
ILRLRLKAVLLVSFAFGADSVLTFIQTSRNNIVSSKDLSLVRLGLDLYEG
ESKFANPEQDRVPLINASREVSHRYISICITHGGAPSAAFLESGPDFLGI
MVDYLFDRKMNIKLITSDMVHTLGIEITLHLTSNEEGTAAFNITKLHHDP
SQVALWLMRRVADLYTCEEITEALDLPAMYSSMSCSFNKSSEVAKMSFSL
FLGALSLSPEPYSEDDFLTLRASSISNWTSYPSPSGRRALLQFARYDRSR
VDGGVLWILAALLVLFALRAGFYSLDYELAKDLAVAEQLEMGSIPIHASS
HSILP*

spliced messenger RNA

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCACATTTTGTTCCTCTCAACGTCTCGCAGTATATACAACCCGG
GCGAGGTTCACTGCATCGTTCTTTCCTCGATTACGACTTCTTCCGCAATT
CAAGTATTCTAAACTCCATTGCATCCACCATTGCAGTTATCGGGCTCAAT
GCAATGTTGCTACAGCTTATCTTTCTACTTGGAGGTCTGACCACGCATTC
AGCCGCTCTCTCAGCGATGCTTCAAGGGTCGCTGTTCTCCGACTGTGTCA
CCAACTTATTTTCTAGAAAAGCGAAGTCGGAGCATATGGCGTGTAAGACG
ATCTTGCGTCTCAGGCTCAAAGCCGTTCTTCTCGTGTCATTCGCTTTCGG
GGCGGATTCCGTCCTCACGTTCATTCAGACATCCAGAAATAATATTGTTA
GTTCTAAGGATTTGTCTCTTGTTCGTCTTGGTCTAGATCTCTACGAAGGG
GAAAGCAAGTTTGCCAATCCTGAACAAGATCGCGTACCTCTGATAAATGC
TTCTAGAGAAGTGTCCCATCGGTACATATCTATATGTATAACACATGGGG
GCGCACCATCGGCAGCCTTTTTAGAAAGCGGCCCAGATTTTCTTGGTATT
ATGGTGGACTATTTGTTTGACAGAAAGATGAATATCAAATTAATTACTTC
CGACATGGTGCATACACTTGGCATAGAGATAACTTTGCATCTCACAAGCA
ATGAGGAGGGCACTGCTGCGTTTAACATTACCAAACTACACCACGACCCG
TCCCAGGTAGCTTTGTGGCTTATGCGGCGGGTAGCAGACTTGTACACATG
TGAGGAAATAACAGAAGCCCTCGATCTTCCAGCAATGTACAGTTCGATGT
CATGCTCGTTCAACAAAAGCTCTGAAGTGGCAAAGATGTCTTTCTCACTT
TTTCTCGGGGCACTAAGTCTTTCACCAGAGCCGTATTCAGAAGATGACTT
TTTGACACTGAGAGCAAGCAGCATATCGAACTGGACATCGTACCCATCTC
CTTCGGGGAGGAGAGCCTTGTTGCAGTTTGCCAGGTATGACCGTAGCCGA
GTAGATGGAGGCGTGTTATGGATTTTGGCCGCCTTACTTGTTCTTTTCGC
TCTCCGGGCTGGCTTTTATTCATTAGATTACGAGCTTGCAAAAGACTTAG
CCGTGGCAGAGCAACTCGAAATGGGTTCGATACCGATTCACGCCTCTTCG
CACTCCATTCTACCTTAG

protein sequence of Gcaud297.t1

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=406bp
MAAHFVPLNVSQYIQPGRGSLHRSFLDYDFFRNSSILNSIASTIAVIGLN
AMLLQLIFLLGGLTTHSAALSAMLQGSLFSDCVTNLFSRKAKSEHMACKT
ILRLRLKAVLLVSFAFGADSVLTFIQTSRNNIVSSKDLSLVRLGLDLYEG
ESKFANPEQDRVPLINASREVSHRYISICITHGGAPSAAFLESGPDFLGI
MVDYLFDRKMNIKLITSDMVHTLGIEITLHLTSNEEGTAAFNITKLHHDP
SQVALWLMRRVADLYTCEEITEALDLPAMYSSMSCSFNKSSEVAKMSFSL
FLGALSLSPEPYSEDDFLTLRASSISNWTSYPSPSGRRALLQFARYDRSR
VDGGVLWILAALLVLFALRAGFYSLDYELAKDLAVAEQLEMGSIPIHASS
HSILP*

mRNA from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCACATTTTGTTCCTCTCAACGTCTCGCAGTATATACAACCCGG
GCGAGGTTCACTGCATCGTTCTTTCCTCGATTACGACTTCTTCCGCAATT
CAAGTATTCTAAACTCCATTGCATCCACCATTGCAGTTATCGGGCTCAAT
GCAATGTTGCTACAGCTTATCTTTCTACTTGGAGGTCTGACCACGCATTC
AGCCGCTCTCTCAGCGATGCTTCAAGGGTCGCTGTTCTCCGACTGTGTCA
CCAACTTATTTTCTAGAAAAGCGAAGTCGGAGCATATGGCGTGTAAGACG
ATCTTGCGTCTCAGGCTCAAAGCCGTTCTTCTCGTGTCATTCGCTTTCGG
GGCGGATTCCGTCCTCACGTTCATTCAGACATCCAGAAATAATATTGTTA
GTTCTAAGGATTTGTCTCTTGTTCGTCTTGGTCTAGATCTCTACGAAGGG
GAAAGCAAGTTTGCCAATCCTGAACAAGATCGCGTACCTCTGATAAATGC
TTCTAGAGAAGTGTCCCATCGGTACATATCTATATGTATAACACATGGGG
GCGCACCATCGGCAGCCTTTTTAGAAAGCGGCCCAGATTTTCTTGGTATT
ATGGTGGACTATTTGTTTGACAGAAAGATGAATATCAAATTAATTACTTC
CGACATGGTGCATACACTTGGCATAGAGATAACTTTGCATCTCACAAGCA
ATGAGGAGGGCACTGCTGCGTTTAACATTACCAAACTACACCACGACCCG
TCCCAGGTAGCTTTGTGGCTTATGCGGCGGGTAGCAGACTTGTACACATG
TGAGGAAATAACAGAAGCCCTCGATCTTCCAGCAATGTACAGTTCGATGT
CATGCTCGTTCAACAAAAGCTCTGAAGTGGCAAAGATGTCTTTCTCACTT
TTTCTCGGGGCACTAAGTCTTTCACCAGAGCCGTATTCAGAAGATGACTT
TTTGACACTGAGAGCAAGCAGCATATCGAACTGGACATCGTACCCATCTC
CTTCGGGGAGGAGAGCCTTGTTGCAGTTTGCCAGGTATGACCGTAGCCGA
GTAGATGGAGGCGTGTTATGGATTTTGGCCGCCTTACTTGTTCTTTTCGC
TCTCCGGGCTGGCTTTTATTCATTAGATTACGAGCTTGCAAAAGACTTAG
CCGTGGCAGAGCAACTCGAAATGGGTTCGATACCGATTCACGCCTCTTCG
CACTCCATTCTACCTTAG

Coding sequence (CDS) from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+

>Gcaud297.t1 ID=Gcaud297.t1|Name=Gcaud297.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1218bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:4990..6207+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCACATTTTGTTCCTCTCAACGTCTCGCAGTATATACAACCCGG
GCGAGGTTCACTGCATCGTTCTTTCCTCGATTACGACTTCTTCCGCAATT
CAAGTATTCTAAACTCCATTGCATCCACCATTGCAGTTATCGGGCTCAAT
GCAATGTTGCTACAGCTTATCTTTCTACTTGGAGGTCTGACCACGCATTC
AGCCGCTCTCTCAGCGATGCTTCAAGGGTCGCTGTTCTCCGACTGTGTCA
CCAACTTATTTTCTAGAAAAGCGAAGTCGGAGCATATGGCGTGTAAGACG
ATCTTGCGTCTCAGGCTCAAAGCCGTTCTTCTCGTGTCATTCGCTTTCGG
GGCGGATTCCGTCCTCACGTTCATTCAGACATCCAGAAATAATATTGTTA
GTTCTAAGGATTTGTCTCTTGTTCGTCTTGGTCTAGATCTCTACGAAGGG
GAAAGCAAGTTTGCCAATCCTGAACAAGATCGCGTACCTCTGATAAATGC
TTCTAGAGAAGTGTCCCATCGGTACATATCTATATGTATAACACATGGGG
GCGCACCATCGGCAGCCTTTTTAGAAAGCGGCCCAGATTTTCTTGGTATT
ATGGTGGACTATTTGTTTGACAGAAAGATGAATATCAAATTAATTACTTC
CGACATGGTGCATACACTTGGCATAGAGATAACTTTGCATCTCACAAGCA
ATGAGGAGGGCACTGCTGCGTTTAACATTACCAAACTACACCACGACCCG
TCCCAGGTAGCTTTGTGGCTTATGCGGCGGGTAGCAGACTTGTACACATG
TGAGGAAATAACAGAAGCCCTCGATCTTCCAGCAATGTACAGTTCGATGT
CATGCTCGTTCAACAAAAGCTCTGAAGTGGCAAAGATGTCTTTCTCACTT
TTTCTCGGGGCACTAAGTCTTTCACCAGAGCCGTATTCAGAAGATGACTT
TTTGACACTGAGAGCAAGCAGCATATCGAACTGGACATCGTACCCATCTC
CTTCGGGGAGGAGAGCCTTGTTGCAGTTTGCCAGGTATGACCGTAGCCGA
GTAGATGGAGGCGTGTTATGGATTTTGGCCGCCTTACTTGTTCTTTTCGC
TCTCCGGGCTGGCTTTTATTCATTAGATTACGAGCTTGCAAAAGACTTAG
CCGTGGCAGAGCAACTCGAAATGGGTTCGATACCGATTCACGCCTCTTCG
CACTCCATTCTACCTTAG