Gcaud2954.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2954.t1
Unique NameGcaud2954.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length577
Homology
BLAST of Gcaud2954.t1 vs. uniprot
Match: A0A2V3J471_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J471_9FLOR)

HSP 1 Score: 432 bits (1112), Expect = 2.630e-142
Identity = 236/561 (42.07%), Postives = 354/561 (63.10%), Query Frame = 0
Query:   10 TADIPSTVFHEKEKSRKHDDAPSPATTIVVESVSIAKTRSPTVRFDSLPSDVIARIIHHALEHSQRGVPYYPPINAPCLLPLALTNQHIRTLIASKCDSDLSYVDAVHSVCEYNEKHVVAKRELVQFYRAQNGHLKKFNLHKMTTISHYFRLELTEIVLSTKPRLTEIDVSGMPRNGEYCAQMLQKVVDVIQLSSSSLQNLKISFHNANFVDMVNSLSLPNLTNVNVRITYGTLPKRVTRFFSKHGASLHTLTLFSAVDIADDIATQIVAHCPGIKHLRFNGGMDPEISSSFLTLIRSYSELQSVSLHNYELHEGLCSTLETHPNKPKLYICRSMFYNLPRLVLDVPSFSKTLVKAETVMGDTDEIMTALTHLQNLEELHIQVHPTMVLRFRTVLSLLKNLKSLTIKCCSVGQ-NAVPRAVIDEDVVVALEGAKCLRQLVIAEPALSVTSLQRIMKCHGDRLEYFVAGIHSPGRSQMRSIIDMVKWVMRHNANMKVLCFGLALRYDSNAKELYDELMRTIALAEQKLPKLNTYWLRLNAKTLLTFPSPAEQGTVHHHDDDG 569
            T  + S      EK+ ++   PSP+TTIVV+ VS+A TR   ++  SLP+DV++RI+  A+  SQRGVPYYPPI +  LLPLAL+N+H+R ++AS C SD  +++A +   +  ++ + A+ +L+ FYR Q+GHL +F LHK + I    RL  T IVLSTKPRL E+D++ + + G+   Q+ + V +++++S+  L+ L +S  N + +++VN++S P L  +++R+ +      +   FS HG +LHTLTLF   +       Q+    P I +L +N GMDP +SS+FL+L+ SY +L+S+SL+N  + E LC TL  HPNKPKL+  R    N   L+  VP  S+TL +A+++  +  + + A+   +NLEELHI+VH  +    R+ LS+L  LKSL I      + +   RA +D ++V+A++ AK LRQLVI  P +S  SLQ IM   GDRLEY V+GIH+P RS  R I+ +++  M H+ N+KVLCFGL L+YD     L  +  RTI +AE+KL  LNTYWLR N ++LL    PA+     ++D DG
Sbjct:   11 TTRLTSPASSADEKAHRYG-TPSPSTTIVVQDVSLALTRPVQLQLLSLPNDVLSRIVSVAISDSQRGVPYYPPIKSHTLLPLALSNKHLRGVVASTCVSDHGFIEA-YLAQDDEDRQLQARMDLISFYRVQDGHLSRFFLHKKSIIPSDVRLYGTNIVLSTKPRLCELDITDVKKGGDCGDQVFESVTELLRISAPYLEVLHLSLQNKDLLEVVNTMSFPKLNTLSLRLPFSPSAASMESLFSTHGTNLHTLTLFCISNFPGQAVAQLPTFAPSITNLTYNSGMDPSVSSAFLSLVESYPKLESLSLNNCRVSEELCHTLSAHPNKPKLFFRRVPVENPASLLSSVPHLSETLFRADSMTLNGSDDIAAVLRFRNLEELHIRVHADVAPLVRS-LSVLPKLKSLFISYHDPWEWDESTRAEVDRNIVIAVQAAKSLRQLVIYSPTMSFDSLQTIMISVGDRLEYLVSGIHTPKRSHSRCIMRLIRCAMHHSPNLKVLCFGLGLQYDRKVNSLQSQFERTIDMAEEKLSGLNTYWLRANLRSLLNIRKPAD---FVNYDSDG 565          
BLAST of Gcaud2954.t1 vs. uniprot
Match: R7QBE6_CHOCR (PEROXIDASE_4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBE6_CHOCR)

HSP 1 Score: 115 bits (288), Expect = 1.120e-23
Identity = 122/519 (23.51%), Postives = 204/519 (39.31%), Query Frame = 0
Query:   74 QRGVPYYPPINAPCLLPLALTNQHIRTLIASKCDSDLSYVDAVHSVCEYNEKHVVAKRELVQFYRAQNGHLKKFNLHKMTTISHYFRLELTEIVLSTKPRLTEIDVSGMPRNGEYCAQMLQKVVDVIQLSSSSLQNLKISFHNANFVDMVNSLSLPNLTNVNVRITYGTLPKRVTRFF---------SKHGASLHTLTLFSAVDIADDIATQ-IVAHCPGIKHLRFNG-----GMDPEISSSFLTLIRSYSELQSVSLHNYELHEGLCSTL-----ETHPNKPKLYICR--SMFYNLPRLVLDVPSFSKTLVKAETVMGDTDEIMTALTHLQNLEELHIQVHPTMVLRFRTVLSLLKNLKSLTIKCCSVGQNAVPRAVIDEDVVVALEGAKCLRQLVIAEPALSVTSLQRIMKCHGDRLEYFVAGIHSPGRSQMRSIIDMVKWVMRHNANMKVLCFGLALRYDSNAKELYDELMRTIALAEQKLPKLNTYWLRLNAKTLLTFPSPAEQGTVHHHDDDGE 570
             RG PYYPP     LLPL+ T+  +R  +A    +D  ++ A            +A R L+ +YR    +L+  +L     ++     ++   V + +P L  +D+S            +  +  + + +  SL  L ++      +D+     L  LT +++R      P R+             +     L TL    +  +   +  + I A  P +K+LR+           E+    + L      L+ + L N  L   L   L       H  +  L  C         P L     S  ++L  A+  +G   E+         +E   + +        R V   L  L S+ ++        V +   D  V           +LV+    L V  L +I +  G R EY V G+H+P  S  R+I+ ++  V  H    K+LCFGL L YD  A +L++  ++TI   E +LP L+T WLR NA++LL    P   G V   + +G+
Sbjct:    1 MRGTPYYPPATPHQLLPLSETSVSLRAAVARHLTTDAHWLRASPEDAPAR----LAPR-LLAWYRFAAANLRVLSLSPRHALAPALVSDIIATVAANRPPLRVLDLSVFALPAPPTEHFVHTLDALFRAARLSLVELHLNLAADFLLDLAADAHLVALTTLDLRHEGPLDPMRLLSLLHSLRELTATTSLKPKLETLHFRLSEPLPPGLRPEAIAAATPAVKNLRYTELSALRADCTELGVPIVQLATVLKGLEELVLTNATLDFSLLQPLLERDSHRHLTRVSLNNCSIPGFLSGFPLLRSSSDSLIRSLDLADVTLG-ASELAVVAERCSAVEAFGLSIERATAAALRRVCVSLPQLASMDLRVVGAKDEPVRQGCRDGIVSAVCATRGEFSKLVVRGETLPVAGLAQIFRTLGARFEYLVTGVHAPRVSMSRAIMGLLAVVKEHCTAFKILCFGLDLAYDPRADDLHEAFVKTIDGLEDRLPMLDTVWLRRNAESLLAIQKPV--GFVEFREGEGD 511          
The following BLAST results are available for this feature:
BLAST of Gcaud2954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J471_9FLOR2.630e-14242.07Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBE6_CHOCR1.120e-2323.51PEROXIDASE_4 domain-containing protein n=1 Tax=Cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 80..555
e-value: 4.9E-18
score: 66.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..576
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 556..576
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 134..454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_368_length_28566_cov_4.066058contigNODE_368_length_28566_cov_4.066058:3694..5424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2954.t1Gcaud2954.t1Gracilaria caudata M_176_S67 malemRNANODE_368_length_28566_cov_4.066058 3694..5424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
MSLPPKTSLTADIPSTVFHEKEKSRKHDDAPSPATTIVVESVSIAKTRSP
TVRFDSLPSDVIARIIHHALEHSQRGVPYYPPINAPCLLPLALTNQHIRT
LIASKCDSDLSYVDAVHSVCEYNEKHVVAKRELVQFYRAQNGHLKKFNLH
KMTTISHYFRLELTEIVLSTKPRLTEIDVSGMPRNGEYCAQMLQKVVDVI
QLSSSSLQNLKISFHNANFVDMVNSLSLPNLTNVNVRITYGTLPKRVTRF
FSKHGASLHTLTLFSAVDIADDIATQIVAHCPGIKHLRFNGGMDPEISSS
FLTLIRSYSELQSVSLHNYELHEGLCSTLETHPNKPKLYICRSMFYNLPR
LVLDVPSFSKTLVKAETVMGDTDEIMTALTHLQNLEELHIQVHPTMVLRF
RTVLSLLKNLKSLTIKCCSVGQNAVPRAVIDEDVVVALEGAKCLRQLVIA
EPALSVTSLQRIMKCHGDRLEYFVAGIHSPGRSQMRSIIDMVKWVMRHNA
NMKVLCFGLALRYDSNAKELYDELMRTIALAEQKLPKLNTYWLRLNAKTL
LTFPSPAEQGTVHHHDDDGEDDARDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf