Gcaud2954.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2954.t1
Unique Name	Gcaud2954.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_368_length_28566_cov_4.066058	contig	NODE_368_length_28566_cov_4.066058:3694..5424 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2954	Gcaud2954	Gracilaria caudata M_176_S67 male	gene	NODE_368_length_28566_cov_4.066058 3694..5424 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2954.t1.stop1	Gcaud2954.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_368_length_28566_cov_4.066058 3694..3696 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2954.t1.CDS1	Gcaud2954.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_368_length_28566_cov_4.066058 3694..5424 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2954.t1.exon1	Gcaud2954.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_368_length_28566_cov_4.066058 3694..5424 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2954.t1.start1	Gcaud2954.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_368_length_28566_cov_4.066058 5422..5424 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2954.t1	Gcaud2954.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_368_length_28566_cov_4.066058 3694..5424 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_368_length_28566_cov_4.066058:3694..5424-
coding sequence from alignment at NODE_368_length_28566_cov_4.066058:3694..5424-

mRNA sequence

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp
MSLPPKTSLTADIPSTVFHEKEKSRKHDDAPSPATTIVVESVSIAKTRSP
TVRFDSLPSDVIARIIHHALEHSQRGVPYYPPINAPCLLPLALTNQHIRT
LIASKCDSDLSYVDAVHSVCEYNEKHVVAKRELVQFYRAQNGHLKKFNLH
KMTTISHYFRLELTEIVLSTKPRLTEIDVSGMPRNGEYCAQMLQKVVDVI
QLSSSSLQNLKISFHNANFVDMVNSLSLPNLTNVNVRITYGTLPKRVTRF
FSKHGASLHTLTLFSAVDIADDIATQIVAHCPGIKHLRFNGGMDPEISSS
FLTLIRSYSELQSVSLHNYELHEGLCSTLETHPNKPKLYICRSMFYNLPR
LVLDVPSFSKTLVKAETVMGDTDEIMTALTHLQNLEELHIQVHPTMVLRF
RTVLSLLKNLKSLTIKCCSVGQNAVPRAVIDEDVVVALEGAKCLRQLVIA
EPALSVTSLQRIMKCHGDRLEYFVAGIHSPGRSQMRSIIDMVKWVMRHNA
NMKVLCFGLALRYDSNAKELYDELMRTIALAEQKLPKLNTYWLRLNAKTL
LTFPSPAEQGTVHHHDDDGEDDARDD*

spliced messenger RNA

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:3694..5424- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTACCGCCTAAGACTTCCCTAACCGCGGACATTCCATCCACCGT
CTTTCACGAAAAGGAAAAGTCGCGCAAGCATGATGACGCCCCGTCTCCTG
CCACCACCATCGTCGTCGAGTCCGTGTCCATAGCCAAAACTAGATCCCCA
ACCGTCCGCTTCGATTCACTCCCAAGCGATGTTATAGCCCGAATCATTCA
CCACGCGCTGGAGCACTCGCAGCGCGGAGTGCCATACTACCCGCCCATCA
ACGCCCCTTGTCTCTTGCCTCTGGCTCTCACCAATCAACATATTCGCACA
CTGATAGCTTCCAAGTGTGATTCAGACCTAAGCTACGTCGACGCCGTTCA
CAGCGTATGCGAATACAACGAGAAGCATGTCGTTGCCAAAAGGGAGTTGG
TGCAGTTCTACAGAGCGCAGAATGGTCATCTCAAGAAATTCAACCTTCAC
AAAATGACTACTATAAGTCATTACTTCCGACTAGAGCTCACAGAAATTGT
GCTATCAACAAAACCGCGCCTCACAGAGATTGATGTATCTGGTATGCCAC
GGAACGGTGAGTACTGTGCGCAGATGTTGCAAAAAGTGGTCGACGTCATT
CAACTTTCGTCTTCATCGCTGCAAAATCTCAAGATCTCTTTCCACAACGC
CAACTTTGTGGACATGGTTAATTCGTTATCGTTGCCGAATCTTACGAACG
TGAACGTTCGCATAACGTACGGCACTTTGCCAAAGAGGGTGACCCGATTT
TTCTCCAAGCACGGAGCTTCACTTCATACTCTCACCCTGTTTTCCGCTGT
AGACATTGCGGATGATATTGCCACCCAAATCGTGGCTCATTGTCCAGGCA
TCAAGCACCTCAGATTCAACGGCGGAATGGATCCCGAAATTTCGAGTTCG
TTCCTCACGCTTATTAGATCATACTCTGAGCTGCAATCGGTTTCGCTGCA
TAACTATGAACTACATGAGGGCCTTTGCAGCACGCTTGAAACGCACCCGA
ACAAGCCCAAATTATATATCTGTCGCTCCATGTTCTACAATCTCCCGCGA
CTCGTACTGGATGTACCGTCTTTCTCAAAGACGCTTGTGAAAGCTGAGAC
AGTCATGGGCGACACGGACGAAATTATGACGGCACTAACGCACCTACAAA
ATCTTGAGGAGCTTCATATTCAAGTCCATCCGACTATGGTACTGCGTTTT
AGAACTGTTCTGTCCTTGTTGAAGAACCTAAAATCTCTGACGATAAAATG
CTGCAGCGTAGGACAAAATGCGGTACCTCGTGCTGTTATTGACGAAGATG
TAGTTGTTGCACTTGAGGGGGCAAAGTGCTTGCGACAGCTGGTGATTGCT
GAGCCAGCGCTTTCAGTTACCTCACTGCAGAGAATTATGAAGTGTCATGG
GGACAGGCTGGAGTACTTTGTGGCCGGTATCCACTCCCCAGGACGATCAC
AGATGCGCAGCATTATCGACATGGTGAAATGGGTGATGCGTCACAATGCG
AACATGAAGGTGTTGTGTTTTGGACTTGCCCTTCGTTACGACAGTAATGC
AAAGGAGCTTTACGACGAACTGATGCGAACGATTGCACTTGCAGAGCAGA
AACTACCCAAGTTGAATACGTATTGGTTGCGATTGAACGCAAAGACATTG
CTAACGTTCCCATCACCGGCTGAGCAGGGGACAGTGCATCACCATGACGA
TGATGGCGAAGATGATGCACGTGATGATTAA

protein sequence of Gcaud2954.t1

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
MSLPPKTSLTADIPSTVFHEKEKSRKHDDAPSPATTIVVESVSIAKTRSP
TVRFDSLPSDVIARIIHHALEHSQRGVPYYPPINAPCLLPLALTNQHIRT
LIASKCDSDLSYVDAVHSVCEYNEKHVVAKRELVQFYRAQNGHLKKFNLH
KMTTISHYFRLELTEIVLSTKPRLTEIDVSGMPRNGEYCAQMLQKVVDVI
QLSSSSLQNLKISFHNANFVDMVNSLSLPNLTNVNVRITYGTLPKRVTRF
FSKHGASLHTLTLFSAVDIADDIATQIVAHCPGIKHLRFNGGMDPEISSS
FLTLIRSYSELQSVSLHNYELHEGLCSTLETHPNKPKLYICRSMFYNLPR
LVLDVPSFSKTLVKAETVMGDTDEIMTALTHLQNLEELHIQVHPTMVLRF
RTVLSLLKNLKSLTIKCCSVGQNAVPRAVIDEDVVVALEGAKCLRQLVIA
EPALSVTSLQRIMKCHGDRLEYFVAGIHSPGRSQMRSIIDMVKWVMRHNA
NMKVLCFGLALRYDSNAKELYDELMRTIALAEQKLPKLNTYWLRLNAKTL
LTFPSPAEQGTVHHHDDDGEDDARDD*

mRNA from alignment at NODE_368_length_28566_cov_4.066058:3694..5424-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:3694..5424- (Gracilaria caudata M_176_S67 male)
ATGTCACTACCGCCTAAGACTTCCCTAACCGCGGACATTCCATCCACCGT
CTTTCACGAAAAGGAAAAGTCGCGCAAGCATGATGACGCCCCGTCTCCTG
CCACCACCATCGTCGTCGAGTCCGTGTCCATAGCCAAAACTAGATCCCCA
ACCGTCCGCTTCGATTCACTCCCAAGCGATGTTATAGCCCGAATCATTCA
CCACGCGCTGGAGCACTCGCAGCGCGGAGTGCCATACTACCCGCCCATCA
ACGCCCCTTGTCTCTTGCCTCTGGCTCTCACCAATCAACATATTCGCACA
CTGATAGCTTCCAAGTGTGATTCAGACCTAAGCTACGTCGACGCCGTTCA
CAGCGTATGCGAATACAACGAGAAGCATGTCGTTGCCAAAAGGGAGTTGG
TGCAGTTCTACAGAGCGCAGAATGGTCATCTCAAGAAATTCAACCTTCAC
AAAATGACTACTATAAGTCATTACTTCCGACTAGAGCTCACAGAAATTGT
GCTATCAACAAAACCGCGCCTCACAGAGATTGATGTATCTGGTATGCCAC
GGAACGGTGAGTACTGTGCGCAGATGTTGCAAAAAGTGGTCGACGTCATT
CAACTTTCGTCTTCATCGCTGCAAAATCTCAAGATCTCTTTCCACAACGC
CAACTTTGTGGACATGGTTAATTCGTTATCGTTGCCGAATCTTACGAACG
TGAACGTTCGCATAACGTACGGCACTTTGCCAAAGAGGGTGACCCGATTT
TTCTCCAAGCACGGAGCTTCACTTCATACTCTCACCCTGTTTTCCGCTGT
AGACATTGCGGATGATATTGCCACCCAAATCGTGGCTCATTGTCCAGGCA
TCAAGCACCTCAGATTCAACGGCGGAATGGATCCCGAAATTTCGAGTTCG
TTCCTCACGCTTATTAGATCATACTCTGAGCTGCAATCGGTTTCGCTGCA
TAACTATGAACTACATGAGGGCCTTTGCAGCACGCTTGAAACGCACCCGA
ACAAGCCCAAATTATATATCTGTCGCTCCATGTTCTACAATCTCCCGCGA
CTCGTACTGGATGTACCGTCTTTCTCAAAGACGCTTGTGAAAGCTGAGAC
AGTCATGGGCGACACGGACGAAATTATGACGGCACTAACGCACCTACAAA
ATCTTGAGGAGCTTCATATTCAAGTCCATCCGACTATGGTACTGCGTTTT
AGAACTGTTCTGTCCTTGTTGAAGAACCTAAAATCTCTGACGATAAAATG
CTGCAGCGTAGGACAAAATGCGGTACCTCGTGCTGTTATTGACGAAGATG
TAGTTGTTGCACTTGAGGGGGCAAAGTGCTTGCGACAGCTGGTGATTGCT
GAGCCAGCGCTTTCAGTTACCTCACTGCAGAGAATTATGAAGTGTCATGG
GGACAGGCTGGAGTACTTTGTGGCCGGTATCCACTCCCCAGGACGATCAC
AGATGCGCAGCATTATCGACATGGTGAAATGGGTGATGCGTCACAATGCG
AACATGAAGGTGTTGTGTTTTGGACTTGCCCTTCGTTACGACAGTAATGC
AAAGGAGCTTTACGACGAACTGATGCGAACGATTGCACTTGCAGAGCAGA
AACTACCCAAGTTGAATACGTATTGGTTGCGATTGAACGCAAAGACATTG
CTAACGTTCCCATCACCGGCTGAGCAGGGGACAGTGCATCACCATGACGA
TGATGGCGAAGATGATGCACGTGATGATTAA

Coding sequence (CDS) from alignment at NODE_368_length_28566_cov_4.066058:3694..5424-

>Gcaud2954.t1 ID=Gcaud2954.t1|Name=Gcaud2954.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1731bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:3694..5424- (Gracilaria caudata M_176_S67 male)
ATGTCACTACCGCCTAAGACTTCCCTAACCGCGGACATTCCATCCACCGT
CTTTCACGAAAAGGAAAAGTCGCGCAAGCATGATGACGCCCCGTCTCCTG
CCACCACCATCGTCGTCGAGTCCGTGTCCATAGCCAAAACTAGATCCCCA
ACCGTCCGCTTCGATTCACTCCCAAGCGATGTTATAGCCCGAATCATTCA
CCACGCGCTGGAGCACTCGCAGCGCGGAGTGCCATACTACCCGCCCATCA
ACGCCCCTTGTCTCTTGCCTCTGGCTCTCACCAATCAACATATTCGCACA
CTGATAGCTTCCAAGTGTGATTCAGACCTAAGCTACGTCGACGCCGTTCA
CAGCGTATGCGAATACAACGAGAAGCATGTCGTTGCCAAAAGGGAGTTGG
TGCAGTTCTACAGAGCGCAGAATGGTCATCTCAAGAAATTCAACCTTCAC
AAAATGACTACTATAAGTCATTACTTCCGACTAGAGCTCACAGAAATTGT
GCTATCAACAAAACCGCGCCTCACAGAGATTGATGTATCTGGTATGCCAC
GGAACGGTGAGTACTGTGCGCAGATGTTGCAAAAAGTGGTCGACGTCATT
CAACTTTCGTCTTCATCGCTGCAAAATCTCAAGATCTCTTTCCACAACGC
CAACTTTGTGGACATGGTTAATTCGTTATCGTTGCCGAATCTTACGAACG
TGAACGTTCGCATAACGTACGGCACTTTGCCAAAGAGGGTGACCCGATTT
TTCTCCAAGCACGGAGCTTCACTTCATACTCTCACCCTGTTTTCCGCTGT
AGACATTGCGGATGATATTGCCACCCAAATCGTGGCTCATTGTCCAGGCA
TCAAGCACCTCAGATTCAACGGCGGAATGGATCCCGAAATTTCGAGTTCG
TTCCTCACGCTTATTAGATCATACTCTGAGCTGCAATCGGTTTCGCTGCA
TAACTATGAACTACATGAGGGCCTTTGCAGCACGCTTGAAACGCACCCGA
ACAAGCCCAAATTATATATCTGTCGCTCCATGTTCTACAATCTCCCGCGA
CTCGTACTGGATGTACCGTCTTTCTCAAAGACGCTTGTGAAAGCTGAGAC
AGTCATGGGCGACACGGACGAAATTATGACGGCACTAACGCACCTACAAA
ATCTTGAGGAGCTTCATATTCAAGTCCATCCGACTATGGTACTGCGTTTT
AGAACTGTTCTGTCCTTGTTGAAGAACCTAAAATCTCTGACGATAAAATG
CTGCAGCGTAGGACAAAATGCGGTACCTCGTGCTGTTATTGACGAAGATG
TAGTTGTTGCACTTGAGGGGGCAAAGTGCTTGCGACAGCTGGTGATTGCT
GAGCCAGCGCTTTCAGTTACCTCACTGCAGAGAATTATGAAGTGTCATGG
GGACAGGCTGGAGTACTTTGTGGCCGGTATCCACTCCCCAGGACGATCAC
AGATGCGCAGCATTATCGACATGGTGAAATGGGTGATGCGTCACAATGCG
AACATGAAGGTGTTGTGTTTTGGACTTGCCCTTCGTTACGACAGTAATGC
AAAGGAGCTTTACGACGAACTGATGCGAACGATTGCACTTGCAGAGCAGA
AACTACCCAAGTTGAATACGTATTGGTTGCGATTGAACGCAAAGACATTG
CTAACGTTCCCATCACCGGCTGAGCAGGGGACAGTGCATCACCATGACGA
TGATGGCGAAGATGATGCACGTGATGATTAA