Gcaud2950.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2950.t1
Unique NameGcaud2950.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Homology
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A2V3IHS8_9FLOR (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHS8_9FLOR)

HSP 1 Score: 374 bits (960), Expect = 3.520e-128
Identity = 194/281 (69.04%), Postives = 225/281 (80.07%), Query Frame = 0
Query:    1 MFAFTTSTALTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQ-SLVKPIGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQCHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            MFAF  S ++T+AR     +SFT S+TP  P R  +   +MALR  S V+ +    ++   A+ IL KA +YMA SVL QY  I+ P G YGVQCTEGSVKGAAE  R+RAL+  FRA Q GPFKK+ DLYENRKNAIAADHICQYEE+LF  YP ++ TYN+AR+EANG C RYATPESVEEAAM+RYMDIQQNNAANPSGVYNSSCNEGAAKGQ+E +R+AALNVAYRNAQKP+ Q+L EKY+QKKYGY+QCHGCNYEE LVSK+PAIGAAFR KTYGY
Sbjct:    1 MFAFAPSVSVTAARTTLPSTSFTTSLTPHRPNR--NATTSMALRSPSSVRSVRSVAAA--RASDILAKAADYMANSVLYQYYNIANPTGEYGVQCTEGSVKGAAEAARVRALSTAFRARQVGPFKKYFDLYENRKNAIAADHICQYEETLFSRYPSVAATYNVARNEANGACSRYATPESVEEAAMLRYMDIQQNNAANPSGVYNSSCNEGAAKGQSEHLRIAALNVAYRNAQKPLAQILQEKYEQKKYGYVQCHGCNYEESLVSKFPAIGAAFRAKTYGY 277          
BLAST of Gcaud2950.t1 vs. uniprot
Match: R7QDA3_CHOCR (Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDA3_CHOCR)

HSP 1 Score: 314 bits (805), Expect = 1.600e-104
Identity = 158/251 (62.95%), Postives = 190/251 (75.70%), Query Frame = 0
Query:   36 HGAPTMALRQSLVKPIGLP------VSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQCHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            H APTM LR SL KP+G         S FGGAA+IL+KAD YMA+S+L QY K++ PAGVYGVQCTEG  K  A+ +RIRALNARFRA QA   + +  L+ENRK AI + H C +EE+ F  Y  ++ +YN++R+EA G+C RYATPE+VEEAA++R+MDIQQ  AANPSGVYN +CNEGAAK QAED RVAALN AYRN QK  G++L EKY Q+K GY   HGCNYEE LV+ YPA+GA FRPKTYGY
Sbjct:   34 HTAPTMILRTSLRKPVGSSSAFVGMASGFGGAAAILSKADTYMAQSILMQYYKVANPAGVYGVQCTEGGSKHMADFSRIRALNARFRARQASKAQAYARLFENRKMAIVSSHECHHEETQFSQYANVAASYNVSRAEALGSCSRYATPETVEEAALLRFMDIQQTTAANPSGVYNVACNEGAAKFQAEDCRVAALNAAYRNGQKSAGKLLQEKYDQRKKGYAATHGCNYEEGLVNNYPALGATFRPKTYGY 284          
BLAST of Gcaud2950.t1 vs. uniprot
Match: P92928_AGLNE (Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Aglaothamnion neglectum TaxID=2765 RepID=P92928_AGLNE)

HSP 1 Score: 299 bits (766), Expect = 1.160e-98
Identity = 166/283 (58.66%), Postives = 201/283 (71.02%), Query Frame = 0
Query:    1 MFAFTTSTALT-SARVATSGSSFTPSVTPVS--PARKQHGAPTMALRQSLVKPIGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQCHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            M AF  STAL  S + AT G+  TP  TP++   A  +  APTM LR SL  PI    S +G  +SI++KAD YMA+ V  QYL ++ P G +GVQCTEGSVK AAEV R+R+L+A +R   + P K   D+YENRK AI A H C YEE  F  Y K++ TYN A+SEA GTC +YA+PE+VEEAAM+RYMDI QNN ANPSGVYN SCNEG+ +GQAEDIRVAALN  YR AQK   ++++EKYQQKK GY   HGC YEE L+S Y AIGAAFRPK+Y +
Sbjct:    1 MAAFAPSTALVASTKPATIGA--TPFATPLANRSAAVKSSAPTMVLRTSLRAPIET-FSVYGTYSSIMSKADTYMAQCVKKQYLAMANPMGTFGVQCTEGSVKFAAEVARVRSLSADYRQKMSSPSKAAFDMYENRKAAIVAAHGCHYEEGYFVDYKKVTSTYNTAKSEAAGTCFKYASPETVEEAAMVRYMDITQNNFANPSGVYNMSCNEGSVRGQAEDIRVAALNAQYRQAQKSTNKLMDEKYQQKKAGYAAAHGCTYEEGLISTYAAIGAAFRPKSYHF 280          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A291FEC5_GRIPA (LR gamma5 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEC5_GRIPA)

HSP 1 Score: 299 bits (766), Expect = 1.370e-98
Identity = 161/286 (56.29%), Postives = 201/286 (70.28%), Query Frame = 0
Query:    1 MFAFTTSTALTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQSLVKPIGLPVSSF------GGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQCHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            M+AF  +T  T+++     +SFT S  P     +   APTM LR  L  P+    ++       G  + IL KADEYMAKSV  QYL  S P G +GVQCTEGSVK AA+ +RIRALNA FRA      KK  D+YENRKNAI+  H C +EE+ F  Y  +S  YN+++SEA+G+C RYA+PE+V EAAM+R+MDIQ   AANP+GVYN SCNEGAA+GQAED+RVAALN A+R  QK +G++L+EKYQQKK GY   HGCNYEE L++KYPA+GAAFR K+YGY
Sbjct:    1 MYAFAPNTPFTASKAVVGKTSFT-SPLPAQSESRPTAAPTMVLRTVLRSPVPSGAATVYGYVGRGNISVILAKADEYMAKSVRKQYLAKSNPYGTFGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKNAISNSHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAMLRFMDIQVKMAANPTGVYNISCNEGAARGQAEDVRVAALNAAFRQGQKSLGKLLDEKYQQKKQGYSFAHGCNYEEGLINKYPALGAAFRSKSYGY 285          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A5J4YX19_PORPP (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX19_PORPP)

HSP 1 Score: 208 bits (530), Expect = 7.670e-63
Identity = 112/221 (50.68%), Postives = 139/221 (62.90%), Query Frame = 0
Query:   61 AASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQ-CHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            A  IL KADE+ A+SV  QY   + P GVY +QCTEG+VKGAA   R  A++A FRA QA P  K   L+ENR++AI A H CQ+EE LF  +PK+S  Y + ++EA  TC RY  P+S+EE  M   +D Q    A P GVY SSC EG AKGQAE  RVAAL  A+R+AQK   +   E+Y    YG     HGC+YEE + + YPA  AA R K+Y Y
Sbjct:   70 AKKILEKADEFFARSVTMQYKAFACPNGVYDIQCTEGTVKGAAYEKRAMAVSAAFRAKQASPAAKARALFENRRHAIIASHECQHEEDLFVRFPKLSAAYMMGKTEAMRTCSRYVVPDSLEEEYMAASVDRQMKERACPGGVYASSCVEGNAKGQAEQARVAALATAFRSAQKSASKTTAERYSSAAYGRDHFAHGCSYEESVFNTYPATAAAMRSKSYNY 290          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A5J4YZM7_PORPP (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZM7_PORPP)

HSP 1 Score: 199 bits (507), Expect = 1.330e-59
Identity = 108/216 (50.00%), Postives = 131/216 (60.65%), Query Frame = 0
Query:   66 NKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQ-CHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            NK DEYMA+SV  QY + +   GVYG QCTEG+VKGAAE +R  AL+ +FR  Q   F K  DL+E RK+AI A   C YEE +   +PK++    L ++E   TC RY  PESVEE  M   +D Q      P GVY+ SC EG AKGQAE  RV+AL  AYR A K    V  E+Y    YG +   HGC+YEEQ  +KYPA  AA R  +YGY
Sbjct:   58 NKVDEYMARSVQRQYKQAAVATGVYGTQCTEGTVKGAAEASRSAALSRQFRIKQRSAFSKAHDLFEFRKHAIIAAAGCSYEEKMVTRFPKLAAAMVLGQTEMMRTCSRYVVPESVEEEYMAASVDKQMKRRGAPGGVYSLSCAEGVAKGQAEIARVSALGAAYRAASKSASAVTAERYNSMAYGRVHFAHGCSYEEQQFNKYPAAAAAMRSDSYGY 273          
BLAST of Gcaud2950.t1 vs. uniprot
Match: Q7XYZ7_GRIJA (Phycoerythrin 31 kDa gamma subunit (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYZ7_GRIJA)

HSP 1 Score: 191 bits (484), Expect = 5.640e-57
Identity = 109/211 (51.66%), Postives = 140/211 (66.35%), Query Frame = 0
Query:   10 LTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQSLVKPIGLPVSSFGG------AASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKG 214
            LT A+ A   S+FT S  P         APTM LR +L  P+    ++  G       ASIL+KAD YMA SV  QYL  S P GV+ VQCTEGSVK AA+ +R+RALN  +R       KK  D++E+RK+AIA  H C +EE+ F +Y KM+  YN+++SEA G+C RYA+PE+V EAAM+R+MDIQ   AANP+GVY+SSCNEGAA+G
Sbjct:    1 LTVAKPAVGSSAFT-SPLPAHTESAPSAAPTMVLRTTLRSPMSSGSATVFGYVGKANIASILSKADAYMAMSVRKQYLAKSNPFGVFNVQCTEGSVKFAADFSRVRALNLNYRTQAYSASKKTMDMFESRKSAIANSHGCHHEETQFVAYKKMTSMYNVSKSEALGSCSRYASPETVTEAAMLRFMDIQMKQAANPTGVYSSSCNEGAARG 210          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A7S0ZID6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZID6_9RHOD)

HSP 1 Score: 191 bits (486), Expect = 4.170e-56
Identity = 105/221 (47.51%), Postives = 135/221 (61.09%), Query Frame = 0
Query:   61 AASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGY-IQCHGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            A   L+KADE+ A+SV  QY   + P G Y  QCTEGSVKGAA   R  AL+A FR+ Q  P +K  + +E RK A+ A   C +EE +F  YPK+++ Y L  +EA  TC RYA PE++ E  M   +D        P+GVY+SSC EG AKGQAE  RVAAL  AYR+A K   Q   EK+   KY   +  HGCN+EE++ +KYPA+ A  R  +YGY
Sbjct:   80 AGKTLDKADEFFARSVTMQYKAYAAPYGTYTPQCTEGSVKGAAFEKRAMALSAAFRSKQKSPGQKAFEKFEMRKMAVIAAAGCDHEEKMFLKYPKLAKAYVLGSAEAMRTCQRYAVPETIAEEYMAAALDKVNKMRGAPNGVYSSSCVEGNAKGQAEQARVAALATAYRSAMKSTSQFEAEKFASSKYARDMFAHGCNHEEKIFNKYPAVAAGMRSVSYGY 300          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A1X6PKI7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKI7_PORUM)

HSP 1 Score: 183 bits (465), Expect = 3.220e-53
Identity = 110/275 (40.00%), Postives = 154/275 (56.00%), Query Frame = 0
Query:    3 AFTTSTALTSARVATSG---SSFTPSVTPVSPARKQHGAPTMALRQSLVKPIGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQCHGCNYEEQLVSKYPAIGAAFR 274
            AF ++  + +ARV   G   SSF  +    + A      PTM L   + K  G   +  G  A I +K+D+Y+A+++  QY +++   GVY VQCTEGSV G AE  RI A    FR  Q  P +K+GDLY  R  +I   H C  EE +  + P+ + +Y + + EA   C+RYATPES EE  +   +  Q   A  P GV+ + C +G  KGQAE++RVAALN +YR  Q   G +  +KY Q  +G  Q +GCNYEE L + YPA  A+F+
Sbjct:    2 AFVSAVPVGAARVTVYGAQKSSFVSTTPAPAAAAATPAGPTMLLAARVRKVSGGFSTKGGSYAQIASKSDKYLAQTINQQYKRVAAAGGVYNVQCTEGSVSGMAEYKRIAAKTRAFRDLQKTPSQKYGDLYAMRSASIQVAHGCHTEEKMLVNNPQAAASYVVGQREAMRQCVRYATPESTEENYIASKVQDQMLKAVAPYGVF-TRCTDGTVKGQAEEMRVAALNASYRTQQASAGTLAQQKYNQSAFGRSQANGCNYEECLCTTYPAAAASFQ 275          
BLAST of Gcaud2950.t1 vs. uniprot
Match: A0A6T6C3B5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6C3B5_9RHOD)

HSP 1 Score: 160 bits (406), Expect = 3.080e-44
Identity = 90/215 (41.86%), Postives = 126/215 (58.60%), Query Frame = 0
Query:   68 ADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVKGAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAI-AADHICQYEESLFCSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPSGVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGYIQC-HGCNYEEQLVSKYPAIGAAFRPKTYGY 280
            AD + A++V  ++ ++    GVY  QCTEG+ KG A   R  A++ +FR  Q    +K GD +ENR+ AI    HIC  EE+L   YP ++ +Y + ++EAN TC RY TP+SV EA M   ++ Q      P GVY SSC +G AKG+AE  RVAA+N AYR   K   Q   ++Y+   +G     H C+YEE + +KYPA+  A R  +Y Y
Sbjct:   79 ADAFFAQTVTRKFKEMVNWTGVYDPQCTEGTAKGEAWDKRELAVSKQFRFKQRSAAQKAGDFFENRRLAIHMVGHICAAEEALLGKYPTLAASYIMGKTEANKTCNRYTTPDSVAEAYMAASIESQNKKRGAPFGVYLSSCVDGNAKGRAEAARVAAVNTAYRAGWKSPAQNARQRYELSAHGRNMLGHDCDYEEAIYNKYPAVAGAMRSSSYRY 293          
The following BLAST results are available for this feature:
BLAST of Gcaud2950.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2V3IHS8_9FLOR3.520e-12869.04R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
R7QDA3_CHOCR1.600e-10462.95Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Chon... [more]
P92928_AGLNE1.160e-9858.66Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Agla... [more]
A0A291FEC5_GRIPA1.370e-9856.29LR gamma5 n=1 Tax=Griffithsia pacifica TaxID=35689... [more]
A0A5J4YX19_PORPP7.670e-6350.68R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
A0A5J4YZM7_PORPP1.330e-5950.00R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
Q7XYZ7_GRIJA5.640e-5751.66Phycoerythrin 31 kDa gamma subunit (Fragment) n=1 ... [more]
A0A7S0ZID6_9RHOD4.170e-5647.51Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6PKI7_PORUM3.220e-5340.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6T6C3B5_9RHOD3.080e-4441.86Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..280
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_816_length_17601_cov_4.570017contigNODE_816_length_17601_cov_4.570017:15940..16782 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2950.t1Gcaud2950.t1Gracilaria caudata M_176_S67 malemRNANODE_816_length_17601_cov_4.570017 15940..16782 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MFAFTTSTALTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQSLVKP
IGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVK
GAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLF
CSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPS
GVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGY
IQCHGCNYEEQLVSKYPAIGAAFRPKTYGY*
back to top