Gcaud2950.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2950.t1
Unique Name	Gcaud2950.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_816_length_17601_cov_4.570017	contig	NODE_816_length_17601_cov_4.570017:15940..16782 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2950	Gcaud2950	Gracilaria caudata M_176_S67 male	gene	NODE_816_length_17601_cov_4.570017 15940..16782 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2950.t1.stop1	Gcaud2950.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_816_length_17601_cov_4.570017 15940..15942 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2950.t1.CDS1	Gcaud2950.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_816_length_17601_cov_4.570017 15940..16782 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2950.t1.exon1	Gcaud2950.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_816_length_17601_cov_4.570017 15940..16782 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2950.t1.start1	Gcaud2950.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_816_length_17601_cov_4.570017 16780..16782 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2950.t1	Gcaud2950.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_816_length_17601_cov_4.570017 15940..16782 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_816_length_17601_cov_4.570017:15940..16782-
coding sequence from alignment at NODE_816_length_17601_cov_4.570017:15940..16782-

mRNA sequence

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MFAFTTSTALTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQSLVKP
IGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVK
GAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLF
CSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPS
GVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGY
IQCHGCNYEEQLVSKYPAIGAAFRPKTYGY*

spliced messenger RNA

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:15940..16782- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTTTCACCACCTCTACTGCTCTTACTTCCGCCCGCGTCGCCAC
TTCTGGAAGCTCGTTCACTCCTAGCGTCACGCCCGTATCTCCCGCCCGAA
AGCAACATGGTGCTCCCACAATGGCGCTGCGTCAGTCGCTCGTCAAGCCA
ATTGGATTGCCTGTCTCTTCTTTCGGCGGCGCCGCCTCTATTCTGAACAA
GGCCGACGAGTACATGGCAAAGTCTGTGCTTAATCAATACCTCAAAATTT
CTCAGCCTGCTGGCGTGTACGGTGTGCAATGCACCGAAGGCTCCGTAAAG
GGAGCCGCTGAAGTCACCAGAATCCGCGCGCTTAACGCTCGTTTTAGGGC
CAGTCAAGCAGGCCCGTTCAAGAAGTTCGGAGACCTGTATGAGAACCGTA
AGAACGCTATTGCGGCCGATCATATCTGCCAATATGAAGAGTCTTTGTTC
TGCAGCTACCCTAAGATGTCTAGAACTTACAACCTTGCCCGCAGTGAGGC
TAATGGTACTTGCATTCGCTATGCCACGCCGGAGAGTGTGGAGGAAGCTG
CTATGATGCGTTACATGGATATTCAGCAGAACAACGCGGCTAACCCCAGT
GGCGTGTACAACAGCTCATGCAATGAGGGTGCCGCCAAGGGTCAGGCTGA
AGATATTCGTGTCGCCGCGTTGAACGTTGCTTACCGCAATGCGCAGAAGC
CAATTGGTCAAGTCTTGAATGAGAAGTACCAACAAAAGAAGTACGGATAC
ATTCAGTGCCATGGATGCAACTATGAAGAACAGCTTGTTAGCAAGTACCC
AGCTATTGGCGCTGCTTTCCGTCCCAAGACGTACGGATACTGA

protein sequence of Gcaud2950.t1

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MFAFTTSTALTSARVATSGSSFTPSVTPVSPARKQHGAPTMALRQSLVKP
IGLPVSSFGGAASILNKADEYMAKSVLNQYLKISQPAGVYGVQCTEGSVK
GAAEVTRIRALNARFRASQAGPFKKFGDLYENRKNAIAADHICQYEESLF
CSYPKMSRTYNLARSEANGTCIRYATPESVEEAAMMRYMDIQQNNAANPS
GVYNSSCNEGAAKGQAEDIRVAALNVAYRNAQKPIGQVLNEKYQQKKYGY
IQCHGCNYEEQLVSKYPAIGAAFRPKTYGY*

mRNA from alignment at NODE_816_length_17601_cov_4.570017:15940..16782-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:15940..16782- (Gracilaria caudata M_176_S67 male)
ATGTTCGCTTTCACCACCTCTACTGCTCTTACTTCCGCCCGCGTCGCCAC
TTCTGGAAGCTCGTTCACTCCTAGCGTCACGCCCGTATCTCCCGCCCGAA
AGCAACATGGTGCTCCCACAATGGCGCTGCGTCAGTCGCTCGTCAAGCCA
ATTGGATTGCCTGTCTCTTCTTTCGGCGGCGCCGCCTCTATTCTGAACAA
GGCCGACGAGTACATGGCAAAGTCTGTGCTTAATCAATACCTCAAAATTT
CTCAGCCTGCTGGCGTGTACGGTGTGCAATGCACCGAAGGCTCCGTAAAG
GGAGCCGCTGAAGTCACCAGAATCCGCGCGCTTAACGCTCGTTTTAGGGC
CAGTCAAGCAGGCCCGTTCAAGAAGTTCGGAGACCTGTATGAGAACCGTA
AGAACGCTATTGCGGCCGATCATATCTGCCAATATGAAGAGTCTTTGTTC
TGCAGCTACCCTAAGATGTCTAGAACTTACAACCTTGCCCGCAGTGAGGC
TAATGGTACTTGCATTCGCTATGCCACGCCGGAGAGTGTGGAGGAAGCTG
CTATGATGCGTTACATGGATATTCAGCAGAACAACGCGGCTAACCCCAGT
GGCGTGTACAACAGCTCATGCAATGAGGGTGCCGCCAAGGGTCAGGCTGA
AGATATTCGTGTCGCCGCGTTGAACGTTGCTTACCGCAATGCGCAGAAGC
CAATTGGTCAAGTCTTGAATGAGAAGTACCAACAAAAGAAGTACGGATAC
ATTCAGTGCCATGGATGCAACTATGAAGAACAGCTTGTTAGCAAGTACCC
AGCTATTGGCGCTGCTTTCCGTCCCAAGACGTACGGATACTGA

Coding sequence (CDS) from alignment at NODE_816_length_17601_cov_4.570017:15940..16782-

>Gcaud2950.t1 ID=Gcaud2950.t1|Name=Gcaud2950.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:15940..16782- (Gracilaria caudata M_176_S67 male)
ATGTTCGCTTTCACCACCTCTACTGCTCTTACTTCCGCCCGCGTCGCCAC
TTCTGGAAGCTCGTTCACTCCTAGCGTCACGCCCGTATCTCCCGCCCGAA
AGCAACATGGTGCTCCCACAATGGCGCTGCGTCAGTCGCTCGTCAAGCCA
ATTGGATTGCCTGTCTCTTCTTTCGGCGGCGCCGCCTCTATTCTGAACAA
GGCCGACGAGTACATGGCAAAGTCTGTGCTTAATCAATACCTCAAAATTT
CTCAGCCTGCTGGCGTGTACGGTGTGCAATGCACCGAAGGCTCCGTAAAG
GGAGCCGCTGAAGTCACCAGAATCCGCGCGCTTAACGCTCGTTTTAGGGC
CAGTCAAGCAGGCCCGTTCAAGAAGTTCGGAGACCTGTATGAGAACCGTA
AGAACGCTATTGCGGCCGATCATATCTGCCAATATGAAGAGTCTTTGTTC
TGCAGCTACCCTAAGATGTCTAGAACTTACAACCTTGCCCGCAGTGAGGC
TAATGGTACTTGCATTCGCTATGCCACGCCGGAGAGTGTGGAGGAAGCTG
CTATGATGCGTTACATGGATATTCAGCAGAACAACGCGGCTAACCCCAGT
GGCGTGTACAACAGCTCATGCAATGAGGGTGCCGCCAAGGGTCAGGCTGA
AGATATTCGTGTCGCCGCGTTGAACGTTGCTTACCGCAATGCGCAGAAGC
CAATTGGTCAAGTCTTGAATGAGAAGTACCAACAAAAGAAGTACGGATAC
ATTCAGTGCCATGGATGCAACTATGAAGAACAGCTTGTTAGCAAGTACCC
AGCTATTGGCGCTGCTTTCCGTCCCAAGACGTACGGATACTGA