Gcaud2911.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2911.t1
Unique Name	Gcaud2911.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	694

Homology

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BLAST of Gcaud2911.t1 vs. uniprot
Match: A0A2V3IPR1_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR1_9FLOR)

HSP 1 Score: 199 bits (506), Expect = 3.500e-51
Identity = 88/158 (55.70%), Postives = 119/158 (75.32%), Query Frame = 0

Query:  475 LKPIPWDPFASEYDESKVGKQGRRIPQDFLDEKMSISEWRELRRAVFEKGDDVDKLAFKILAEMLLSPTLGVREDALDGLNSAIKKMKNEHYYSKETGSYMSTGSIPEKLWQRERRFVEGDEEWMKAQSNESKALHLMCENLHYMFDQSEDVEAVAKK 632
            +KP+ WDP+ S ++ + VGK+G+R+P  FLD   S+SEWRE+R  VFEKGDDVDKLAFK++ E+LLSPTLG++  ALD L+ AIKK    HYYSK TG Y     + +K+W+RERRF+EGDE+WMK QS+E KA+HL CEN+HY F+Q   +   +++
Sbjct:  529 VKPVAWDPYLSMFNPALVGKEGKRVPDAFLDAVPSMSEWREMRHCVFEKGDDVDKLAFKLMQEILLSPTLGIQASALDHLDRAIKKHGAAHYYSKATGGYSYRKDLADKMWKRERRFIEGDEKWMKEQSDEDKAMHLFCENVHYAFEQGRTLRMCSRR 686

[Close]

BLAST of Gcaud2911.t1 vs. uniprot
Match: R7QP37_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP37_CHOCR)

HSP 1 Score: 86.3 bits (212), Expect = 7.260e-14
Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 0

Query:  499 IPQDFLDEKMSISEWRELRRAVFEKGDDVDKLAFKILAEMLLSPTLGVREDALDGLNSAIKKMKNEHYYSKETGSYMSTGSIPEKLWQRERRF---VEGDEEWMKAQSNESKALHLMCENLHYMFDQSEDVEAVAKKAHFSTLPFRG--GVTGVRSSAGRMIDGQDGRRIGDVDAVENDELFRE-IHEF 681
            + + +L+  M ++EWRELR +V     DVDKLA+K++ E++LSP LG+ E  L  L+ A+    N+HY +   G +      P  L + + ++   ++ D +W + Q+ E  AL    +NL Y FD              S  P RG  G    R   G  +DG    R  D  AV  D L+ + IH +
Sbjct:  414 VSRGYLNTPMPVTEWRELRHSVLSGTSDVDKLAYKMMQELVLSPVLGINETLLAPLSKAMMSAVNKHYVTPH-GIFAKLSDFPTGLLRMDPKYNSELKADADWSQYQTPEYLALCQFRDNLEYTFDNHRHQTKPTSNLR-SDAPPRGSFGARNQRKGPGVPLDGMSSPRYQD--AVATDPLYTKLIHHY 598

The following BLAST results are available for this feature:

BLAST of Gcaud2911.t1 vs. uniprot

BLAST of Gcaud2911.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IPR1_9FLOR	3.500e-51	55.70	C2H2-type domain-containing protein n=1 Tax=Gracil...	[more]
R7QP37_CHOCR	7.260e-14	31.75	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 210..244 e-value: 1.2E-6 score: 38.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 191..244 e-value: 8.6E-10 score: 40.0
None	No IPR available	PFAM	PF12874	zf-met	coord: 214..237 e-value: 1.5E-6 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..470
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 392..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..335
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 200..246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:58504..60585 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1	Gcaud2911.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_18_length_79438_cov_4.566121 58504..60585 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=694bp
MLGKRDQHAMHMKVSPLRTTLSSQLKSATGSVRLRSAQKPYPGAAPLESK
LPPPSQRHIQSNALNLQQDDPDMDQIGLLPVPQDCEMPDINWEEYDNIDE
PSKPHQPVRDICSSRPIAQGRSSRITPDPNPAGDHNPQNQTPSVRYNGNA
PTPRRENIGMQRKEDKLPVPRRAPQRPKDANANNFEERSDANSQRKASGQ
RIAEEKGRMSKRKWCSLCDIYVTSASNMPAHIKGKKHQSNLKGKRLTSSN
EKLDRPYKHTERTAVDKGGVDRKNEDDPARNSGNSRMSSQGQFGPANTTR
STRKGNERASNYPHAGGGKRASNTNTSNNACATDTDKRGWNAHYSSHPRA
GSSDHAIPNIHKYGASSFRPSQHARHQVDTGRSGMDIDKSSAPPAGSSNA
ASMQTSQRAATRGVEESGWRLRSGEPIPQGGRSEVTPPRLRGLSTAQRSR
KEGGASSIGGKSMLEVRPTDRVETLKPIPWDPFASEYDESKVGKQGRRIP
QDFLDEKMSISEWRELRRAVFEKGDDVDKLAFKILAEMLLSPTLGVREDA
LDGLNSAIKKMKNEHYYSKETGSYMSTGSIPEKLWQRERRFVEGDEEWMK
AQSNESKALHLMCENLHYMFDQSEDVEAVAKKAHFSTLPFRGGVTGVRSS
AGRMIDGQDGRRIGDVDAVENDELFREIHEFLLAQKMRPAPRE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR036236	Znf_C2H2_sf