Gcaud2911.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2911.t1
Unique Name	Gcaud2911.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	694

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:58504..60585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2911	Gcaud2911	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 58504..60585 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1.stop1	Gcaud2911.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 58504..58506 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1.CDS1	Gcaud2911.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 58504..60585 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1.exon1	Gcaud2911.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 58504..60585 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1.start1	Gcaud2911.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 60583..60585 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2911.t1	Gcaud2911.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 58504..60585 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:58504..60585-
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:58504..60585-

mRNA sequence

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=694bp
MLGKRDQHAMHMKVSPLRTTLSSQLKSATGSVRLRSAQKPYPGAAPLESK
LPPPSQRHIQSNALNLQQDDPDMDQIGLLPVPQDCEMPDINWEEYDNIDE
PSKPHQPVRDICSSRPIAQGRSSRITPDPNPAGDHNPQNQTPSVRYNGNA
PTPRRENIGMQRKEDKLPVPRRAPQRPKDANANNFEERSDANSQRKASGQ
RIAEEKGRMSKRKWCSLCDIYVTSASNMPAHIKGKKHQSNLKGKRLTSSN
EKLDRPYKHTERTAVDKGGVDRKNEDDPARNSGNSRMSSQGQFGPANTTR
STRKGNERASNYPHAGGGKRASNTNTSNNACATDTDKRGWNAHYSSHPRA
GSSDHAIPNIHKYGASSFRPSQHARHQVDTGRSGMDIDKSSAPPAGSSNA
ASMQTSQRAATRGVEESGWRLRSGEPIPQGGRSEVTPPRLRGLSTAQRSR
KEGGASSIGGKSMLEVRPTDRVETLKPIPWDPFASEYDESKVGKQGRRIP
QDFLDEKMSISEWRELRRAVFEKGDDVDKLAFKILAEMLLSPTLGVREDA
LDGLNSAIKKMKNEHYYSKETGSYMSTGSIPEKLWQRERRFVEGDEEWMK
AQSNESKALHLMCENLHYMFDQSEDVEAVAKKAHFSTLPFRGGVTGVRSS
AGRMIDGQDGRRIGDVDAVENDELFREIHEFLLAQKMRPAPRE*

spliced messenger RNA

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2082bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:58504..60585- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGCAAGCGGGATCAACATGCAATGCACATGAAAGTTTCCCCGTT
GCGAACAACCCTCTCTTCCCAGTTGAAATCCGCAACTGGAAGTGTTCGAC
TCCGGTCGGCCCAAAAGCCGTATCCTGGAGCTGCCCCGCTCGAGAGTAAA
TTACCCCCGCCTTCGCAGAGACATATCCAGTCCAATGCTCTGAACCTTCA
GCAGGACGACCCGGACATGGACCAGATTGGCCTCCTGCCCGTGCCACAGG
ATTGTGAAATGCCAGACATCAATTGGGAGGAATACGATAACATTGATGAA
CCTTCTAAACCACACCAACCAGTAAGGGATATATGCTCTTCACGGCCAAT
AGCACAGGGAAGGTCCAGCCGTATTACTCCGGATCCGAACCCTGCCGGCG
ACCACAATCCGCAGAACCAAACTCCTAGCGTGCGTTACAACGGCAACGCT
CCTACTCCAAGACGTGAGAACATTGGTATGCAGCGGAAAGAAGATAAGTT
ACCCGTCCCGCGACGAGCGCCGCAAAGGCCAAAAGATGCGAACGCGAACA
ACTTCGAGGAAAGGTCAGATGCAAACTCTCAAAGAAAAGCTTCGGGACAA
CGCATCGCAGAGGAAAAAGGTCGCATGAGTAAAAGAAAATGGTGTAGTTT
GTGTGATATTTACGTCACTAGCGCAAGTAACATGCCCGCACATATCAAAG
GTAAGAAGCATCAATCAAATCTGAAAGGGAAACGGCTAACGTCATCAAAC
GAGAAGCTCGACCGTCCGTACAAACACACCGAACGCACAGCCGTCGACAA
GGGAGGTGTTGATCGAAAAAATGAAGACGACCCAGCACGAAACAGTGGAA
ACTCTCGAATGTCGAGTCAAGGTCAATTTGGACCAGCCAATACAACACGT
AGTACGCGGAAAGGAAACGAACGTGCTTCGAACTATCCACATGCTGGAGG
CGGCAAACGAGCCTCCAACACAAATACGTCTAACAACGCTTGTGCTACGG
ACACCGATAAACGTGGATGGAATGCACATTATTCGAGTCATCCACGTGCT
GGAAGCAGCGACCACGCAATCCCGAATATCCATAAGTACGGGGCGTCTTC
TTTCAGACCTTCTCAACATGCGCGGCATCAAGTCGACACAGGTAGGTCTG
GGATGGATATCGACAAGTCTTCAGCTCCGCCAGCAGGATCATCAAATGCA
GCATCGATGCAAACGTCACAACGTGCCGCAACTCGTGGTGTCGAGGAGAG
CGGGTGGCGTTTGCGTAGTGGCGAACCAATACCACAAGGAGGACGAAGTG
AAGTGACACCGCCAAGATTACGAGGACTATCAACAGCGCAACGGTCACGC
AAAGAAGGTGGCGCCTCGTCAATCGGTGGTAAGAGCATGCTTGAGGTTCG
GCCGACGGACAGAGTGGAAACCTTGAAGCCGATTCCATGGGACCCTTTTG
CAAGCGAATATGATGAGTCGAAAGTGGGAAAGCAAGGGAGACGCATTCCT
CAGGATTTTTTGGATGAGAAGATGTCCATATCAGAGTGGCGAGAATTGCG
ACGGGCTGTGTTTGAGAAGGGCGATGATGTGGATAAGTTGGCATTCAAAA
TTCTGGCGGAGATGTTGCTTTCCCCAACTTTGGGCGTACGGGAAGATGCG
CTGGACGGTCTTAATTCAGCAATAAAGAAAATGAAGAATGAACATTACTA
TAGCAAGGAAACTGGTTCTTACATGAGTACTGGTAGTATCCCTGAGAAAC
TGTGGCAACGAGAGAGACGGTTTGTGGAGGGAGATGAAGAATGGATGAAG
GCGCAAAGCAATGAGAGCAAGGCTTTGCACCTGATGTGTGAGAACTTGCA
TTACATGTTTGACCAGAGCGAAGACGTGGAAGCAGTGGCTAAAAAGGCGC
ACTTCTCGACGTTGCCGTTCCGTGGAGGCGTGACTGGAGTGAGAAGTAGT
GCGGGGAGGATGATAGACGGACAAGACGGACGGCGTATTGGAGACGTTGA
TGCTGTCGAGAATGATGAACTATTTCGCGAGATCCATGAGTTTCTCCTGG
CGCAAAAGATGCGACCAGCACCACGGGAATGA

protein sequence of Gcaud2911.t1

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=694bp
MLGKRDQHAMHMKVSPLRTTLSSQLKSATGSVRLRSAQKPYPGAAPLESK
LPPPSQRHIQSNALNLQQDDPDMDQIGLLPVPQDCEMPDINWEEYDNIDE
PSKPHQPVRDICSSRPIAQGRSSRITPDPNPAGDHNPQNQTPSVRYNGNA
PTPRRENIGMQRKEDKLPVPRRAPQRPKDANANNFEERSDANSQRKASGQ
RIAEEKGRMSKRKWCSLCDIYVTSASNMPAHIKGKKHQSNLKGKRLTSSN
EKLDRPYKHTERTAVDKGGVDRKNEDDPARNSGNSRMSSQGQFGPANTTR
STRKGNERASNYPHAGGGKRASNTNTSNNACATDTDKRGWNAHYSSHPRA
GSSDHAIPNIHKYGASSFRPSQHARHQVDTGRSGMDIDKSSAPPAGSSNA
ASMQTSQRAATRGVEESGWRLRSGEPIPQGGRSEVTPPRLRGLSTAQRSR
KEGGASSIGGKSMLEVRPTDRVETLKPIPWDPFASEYDESKVGKQGRRIP
QDFLDEKMSISEWRELRRAVFEKGDDVDKLAFKILAEMLLSPTLGVREDA
LDGLNSAIKKMKNEHYYSKETGSYMSTGSIPEKLWQRERRFVEGDEEWMK
AQSNESKALHLMCENLHYMFDQSEDVEAVAKKAHFSTLPFRGGVTGVRSS
AGRMIDGQDGRRIGDVDAVENDELFREIHEFLLAQKMRPAPRE*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:58504..60585-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2082bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:58504..60585- (Gracilaria caudata M_176_S67 male)
ATGCTGGGCAAGCGGGATCAACATGCAATGCACATGAAAGTTTCCCCGTT
GCGAACAACCCTCTCTTCCCAGTTGAAATCCGCAACTGGAAGTGTTCGAC
TCCGGTCGGCCCAAAAGCCGTATCCTGGAGCTGCCCCGCTCGAGAGTAAA
TTACCCCCGCCTTCGCAGAGACATATCCAGTCCAATGCTCTGAACCTTCA
GCAGGACGACCCGGACATGGACCAGATTGGCCTCCTGCCCGTGCCACAGG
ATTGTGAAATGCCAGACATCAATTGGGAGGAATACGATAACATTGATGAA
CCTTCTAAACCACACCAACCAGTAAGGGATATATGCTCTTCACGGCCAAT
AGCACAGGGAAGGTCCAGCCGTATTACTCCGGATCCGAACCCTGCCGGCG
ACCACAATCCGCAGAACCAAACTCCTAGCGTGCGTTACAACGGCAACGCT
CCTACTCCAAGACGTGAGAACATTGGTATGCAGCGGAAAGAAGATAAGTT
ACCCGTCCCGCGACGAGCGCCGCAAAGGCCAAAAGATGCGAACGCGAACA
ACTTCGAGGAAAGGTCAGATGCAAACTCTCAAAGAAAAGCTTCGGGACAA
CGCATCGCAGAGGAAAAAGGTCGCATGAGTAAAAGAAAATGGTGTAGTTT
GTGTGATATTTACGTCACTAGCGCAAGTAACATGCCCGCACATATCAAAG
GTAAGAAGCATCAATCAAATCTGAAAGGGAAACGGCTAACGTCATCAAAC
GAGAAGCTCGACCGTCCGTACAAACACACCGAACGCACAGCCGTCGACAA
GGGAGGTGTTGATCGAAAAAATGAAGACGACCCAGCACGAAACAGTGGAA
ACTCTCGAATGTCGAGTCAAGGTCAATTTGGACCAGCCAATACAACACGT
AGTACGCGGAAAGGAAACGAACGTGCTTCGAACTATCCACATGCTGGAGG
CGGCAAACGAGCCTCCAACACAAATACGTCTAACAACGCTTGTGCTACGG
ACACCGATAAACGTGGATGGAATGCACATTATTCGAGTCATCCACGTGCT
GGAAGCAGCGACCACGCAATCCCGAATATCCATAAGTACGGGGCGTCTTC
TTTCAGACCTTCTCAACATGCGCGGCATCAAGTCGACACAGGTAGGTCTG
GGATGGATATCGACAAGTCTTCAGCTCCGCCAGCAGGATCATCAAATGCA
GCATCGATGCAAACGTCACAACGTGCCGCAACTCGTGGTGTCGAGGAGAG
CGGGTGGCGTTTGCGTAGTGGCGAACCAATACCACAAGGAGGACGAAGTG
AAGTGACACCGCCAAGATTACGAGGACTATCAACAGCGCAACGGTCACGC
AAAGAAGGTGGCGCCTCGTCAATCGGTGGTAAGAGCATGCTTGAGGTTCG
GCCGACGGACAGAGTGGAAACCTTGAAGCCGATTCCATGGGACCCTTTTG
CAAGCGAATATGATGAGTCGAAAGTGGGAAAGCAAGGGAGACGCATTCCT
CAGGATTTTTTGGATGAGAAGATGTCCATATCAGAGTGGCGAGAATTGCG
ACGGGCTGTGTTTGAGAAGGGCGATGATGTGGATAAGTTGGCATTCAAAA
TTCTGGCGGAGATGTTGCTTTCCCCAACTTTGGGCGTACGGGAAGATGCG
CTGGACGGTCTTAATTCAGCAATAAAGAAAATGAAGAATGAACATTACTA
TAGCAAGGAAACTGGTTCTTACATGAGTACTGGTAGTATCCCTGAGAAAC
TGTGGCAACGAGAGAGACGGTTTGTGGAGGGAGATGAAGAATGGATGAAG
GCGCAAAGCAATGAGAGCAAGGCTTTGCACCTGATGTGTGAGAACTTGCA
TTACATGTTTGACCAGAGCGAAGACGTGGAAGCAGTGGCTAAAAAGGCGC
ACTTCTCGACGTTGCCGTTCCGTGGAGGCGTGACTGGAGTGAGAAGTAGT
GCGGGGAGGATGATAGACGGACAAGACGGACGGCGTATTGGAGACGTTGA
TGCTGTCGAGAATGATGAACTATTTCGCGAGATCCATGAGTTTCTCCTGG
CGCAAAAGATGCGACCAGCACCACGGGAATGA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:58504..60585-

>Gcaud2911.t1 ID=Gcaud2911.t1|Name=Gcaud2911.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2082bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:58504..60585- (Gracilaria caudata M_176_S67 male)
ATGCTGGGCAAGCGGGATCAACATGCAATGCACATGAAAGTTTCCCCGTT
GCGAACAACCCTCTCTTCCCAGTTGAAATCCGCAACTGGAAGTGTTCGAC
TCCGGTCGGCCCAAAAGCCGTATCCTGGAGCTGCCCCGCTCGAGAGTAAA
TTACCCCCGCCTTCGCAGAGACATATCCAGTCCAATGCTCTGAACCTTCA
GCAGGACGACCCGGACATGGACCAGATTGGCCTCCTGCCCGTGCCACAGG
ATTGTGAAATGCCAGACATCAATTGGGAGGAATACGATAACATTGATGAA
CCTTCTAAACCACACCAACCAGTAAGGGATATATGCTCTTCACGGCCAAT
AGCACAGGGAAGGTCCAGCCGTATTACTCCGGATCCGAACCCTGCCGGCG
ACCACAATCCGCAGAACCAAACTCCTAGCGTGCGTTACAACGGCAACGCT
CCTACTCCAAGACGTGAGAACATTGGTATGCAGCGGAAAGAAGATAAGTT
ACCCGTCCCGCGACGAGCGCCGCAAAGGCCAAAAGATGCGAACGCGAACA
ACTTCGAGGAAAGGTCAGATGCAAACTCTCAAAGAAAAGCTTCGGGACAA
CGCATCGCAGAGGAAAAAGGTCGCATGAGTAAAAGAAAATGGTGTAGTTT
GTGTGATATTTACGTCACTAGCGCAAGTAACATGCCCGCACATATCAAAG
GTAAGAAGCATCAATCAAATCTGAAAGGGAAACGGCTAACGTCATCAAAC
GAGAAGCTCGACCGTCCGTACAAACACACCGAACGCACAGCCGTCGACAA
GGGAGGTGTTGATCGAAAAAATGAAGACGACCCAGCACGAAACAGTGGAA
ACTCTCGAATGTCGAGTCAAGGTCAATTTGGACCAGCCAATACAACACGT
AGTACGCGGAAAGGAAACGAACGTGCTTCGAACTATCCACATGCTGGAGG
CGGCAAACGAGCCTCCAACACAAATACGTCTAACAACGCTTGTGCTACGG
ACACCGATAAACGTGGATGGAATGCACATTATTCGAGTCATCCACGTGCT
GGAAGCAGCGACCACGCAATCCCGAATATCCATAAGTACGGGGCGTCTTC
TTTCAGACCTTCTCAACATGCGCGGCATCAAGTCGACACAGGTAGGTCTG
GGATGGATATCGACAAGTCTTCAGCTCCGCCAGCAGGATCATCAAATGCA
GCATCGATGCAAACGTCACAACGTGCCGCAACTCGTGGTGTCGAGGAGAG
CGGGTGGCGTTTGCGTAGTGGCGAACCAATACCACAAGGAGGACGAAGTG
AAGTGACACCGCCAAGATTACGAGGACTATCAACAGCGCAACGGTCACGC
AAAGAAGGTGGCGCCTCGTCAATCGGTGGTAAGAGCATGCTTGAGGTTCG
GCCGACGGACAGAGTGGAAACCTTGAAGCCGATTCCATGGGACCCTTTTG
CAAGCGAATATGATGAGTCGAAAGTGGGAAAGCAAGGGAGACGCATTCCT
CAGGATTTTTTGGATGAGAAGATGTCCATATCAGAGTGGCGAGAATTGCG
ACGGGCTGTGTTTGAGAAGGGCGATGATGTGGATAAGTTGGCATTCAAAA
TTCTGGCGGAGATGTTGCTTTCCCCAACTTTGGGCGTACGGGAAGATGCG
CTGGACGGTCTTAATTCAGCAATAAAGAAAATGAAGAATGAACATTACTA
TAGCAAGGAAACTGGTTCTTACATGAGTACTGGTAGTATCCCTGAGAAAC
TGTGGCAACGAGAGAGACGGTTTGTGGAGGGAGATGAAGAATGGATGAAG
GCGCAAAGCAATGAGAGCAAGGCTTTGCACCTGATGTGTGAGAACTTGCA
TTACATGTTTGACCAGAGCGAAGACGTGGAAGCAGTGGCTAAAAAGGCGC
ACTTCTCGACGTTGCCGTTCCGTGGAGGCGTGACTGGAGTGAGAAGTAGT
GCGGGGAGGATGATAGACGGACAAGACGGACGGCGTATTGGAGACGTTGA
TGCTGTCGAGAATGATGAACTATTTCGCGAGATCCATGAGTTTCTCCTGG
CGCAAAAGATGCGACCAGCACCACGGGAATGA