Gcaud2901.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2901.t1
Unique NameGcaud2901.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Homology
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BLAST of Gcaud2901.t1 vs. uniprot
Match: A0A2V3IX99_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX99_9FLOR)

HSP 1 Score: 152 bits (385), Expect = 2.890e-41
Identity = 113/261 (43.30%), Postives = 145/261 (55.56%), Query Frame = 0 
Query:    4 NRSQQSLPVWRRVLAVTTMSASMLFTPLPLSRQRPQNTFHFPTPPTALAA-PA--------KRAARSTTNTSDVETAFMTLAAVSLGGLVMRAIVRSSQDDEAYRKKVLEDSKRLQEEENLRALRIKRTEMEAVENDE------TSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGTGSAVLDKPDNESPTA-PTASQSDQTQNSESDRNDS-DVVPPSMANQEQAEMLKRMWNLNSFDKNE 247
            +R    LP+WRR+LA TT+SAS+ F PL        N+     P ++LAA PA        K +  +T+  SDVE+A +TLAAV++G LVMRA+V S +DD+AYRKKV E S+RLQ+EE++RALRI+R+EMEAV  D       +                                               DR TGSAVLDKPD+   T  PTA+  +  + S S  +D  D  PPSMA+ EQAEMLKRMWNLNSFDKN+
Sbjct:   63 HRPPAKLPLWRRLLAATTLSASVFFAPLHSVCPHDSNSHQ---PRSSLAAVPALALGVTTTKSSTPNTSRASDVESAALTLAAVTVGALVMRAVVNSQRDDDAYRKKVAEQSQRLQQEEDMRALRIQRSEMEAVNTDSDKQPQTSDDDQFLQAFRERVSGLNMERDPDDTEEDDTNNSDKYDKQQLDLVNMPDRSTGSAVLDKPDDLPDTPDPTAANKEPVEPSSSQTDDEHDAQPPSMADPEQAEMLKRMWNLNSFDKND 320
The following BLAST results are available for this feature:
BLAST of Gcaud2901.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IX99_9FLOR2.890e-4143.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_18_length_79438_cov_4.566121contigNODE_18_length_79438_cov_4.566121:23614..24357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2901.t1Gcaud2901.t1Gracilaria caudata M_176_S67 malemRNANODE_18_length_79438_cov_4.566121 23614..24357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MTSNRSQQSLPVWRRVLAVTTMSASMLFTPLPLSRQRPQNTFHFPTPPTA
LAAPAKRAARSTTNTSDVETAFMTLAAVSLGGLVMRAIVRSSQDDEAYRK
KVLEDSKRLQEEENLRALRIKRTEMEAVENDETSVDDDDFMKAFRERVSD
LQTEDQQEPSEDKDATEKYGKQELDLVNTQDRGTGSAVLDKPDNESPTAP
TASQSDQTQNSESDRNDSDVVPPSMANQEQAEMLKRMWNLNSFDKNE*
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