Gcaud2901.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2901.t1
Unique Name	Gcaud2901.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:23614..24357 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2901	Gcaud2901	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 23614..24357 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2901.t1.start1	Gcaud2901.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 23614..23616 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2901.t1.CDS1	Gcaud2901.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 23614..24357 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2901.t1.exon1	Gcaud2901.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 23614..24357 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2901.t1.stop1	Gcaud2901.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 24355..24357 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2901.t1	Gcaud2901.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 23614..24357 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+

mRNA sequence

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=248bp
MTSNRSQQSLPVWRRVLAVTTMSASMLFTPLPLSRQRPQNTFHFPTPPTA
LAAPAKRAARSTTNTSDVETAFMTLAAVSLGGLVMRAIVRSSQDDEAYRK
KVLEDSKRLQEEENLRALRIKRTEMEAVENDETSVDDDDFMKAFRERVSD
LQTEDQQEPSEDKDATEKYGKQELDLVNTQDRGTGSAVLDKPDNESPTAP
TASQSDQTQNSESDRNDSDVVPPSMANQEQAEMLKRMWNLNSFDKNE*

spliced messenger RNA

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTAATCGCTCTCAACAATCGCTTCCGGTCTGGCGTCGCGTCCT
CGCCGTAACTACTATGTCTGCATCAATGCTGTTCACTCCCTTACCTCTCT
CACGACAACGTCCGCAAAACACTTTCCACTTCCCCACCCCCCCAACCGCT
CTCGCTGCCCCGGCCAAACGCGCCGCCAGGTCTACTACCAATACTTCTGA
TGTCGAAACTGCATTCATGACGCTGGCGGCTGTCTCTCTGGGAGGACTTG
TAATGCGAGCAATTGTGCGCTCCAGCCAGGACGACGAGGCGTATCGCAAG
AAAGTGCTTGAGGATTCCAAACGTTTGCAGGAAGAGGAGAATCTGAGAGC
ATTGCGCATCAAACGTACGGAGATGGAGGCTGTTGAAAACGACGAAACTT
CTGTAGACGACGACGACTTCATGAAAGCATTCAGAGAACGAGTATCAGAT
TTGCAGACCGAGGATCAACAAGAGCCGAGCGAAGACAAGGATGCCACTGA
AAAATATGGCAAGCAAGAACTCGATTTGGTAAACACTCAAGATCGCGGAA
CAGGGAGCGCTGTACTGGACAAGCCAGATAACGAAAGTCCCACTGCTCCG
ACTGCATCACAATCTGACCAAACTCAAAACTCGGAGAGTGATCGAAACGA
CTCCGATGTTGTGCCTCCCTCCATGGCGAATCAGGAACAGGCTGAAATGC
TGAAACGAATGTGGAATCTTAACTCTTTTGACAAGAACGAATAA

protein sequence of Gcaud2901.t1

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MTSNRSQQSLPVWRRVLAVTTMSASMLFTPLPLSRQRPQNTFHFPTPPTA
LAAPAKRAARSTTNTSDVETAFMTLAAVSLGGLVMRAIVRSSQDDEAYRK
KVLEDSKRLQEEENLRALRIKRTEMEAVENDETSVDDDDFMKAFRERVSD
LQTEDQQEPSEDKDATEKYGKQELDLVNTQDRGTGSAVLDKPDNESPTAP
TASQSDQTQNSESDRNDSDVVPPSMANQEQAEMLKRMWNLNSFDKNE*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+ (Gracilaria caudata M_176_S67 male)
ATGACCTCTAATCGCTCTCAACAATCGCTTCCGGTCTGGCGTCGCGTCCT
CGCCGTAACTACTATGTCTGCATCAATGCTGTTCACTCCCTTACCTCTCT
CACGACAACGTCCGCAAAACACTTTCCACTTCCCCACCCCCCCAACCGCT
CTCGCTGCCCCGGCCAAACGCGCCGCCAGGTCTACTACCAATACTTCTGA
TGTCGAAACTGCATTCATGACGCTGGCGGCTGTCTCTCTGGGAGGACTTG
TAATGCGAGCAATTGTGCGCTCCAGCCAGGACGACGAGGCGTATCGCAAG
AAAGTGCTTGAGGATTCCAAACGTTTGCAGGAAGAGGAGAATCTGAGAGC
ATTGCGCATCAAACGTACGGAGATGGAGGCTGTTGAAAACGACGAAACTT
CTGTAGACGACGACGACTTCATGAAAGCATTCAGAGAACGAGTATCAGAT
TTGCAGACCGAGGATCAACAAGAGCCGAGCGAAGACAAGGATGCCACTGA
AAAATATGGCAAGCAAGAACTCGATTTGGTAAACACTCAAGATCGCGGAA
CAGGGAGCGCTGTACTGGACAAGCCAGATAACGAAAGTCCCACTGCTCCG
ACTGCATCACAATCTGACCAAACTCAAAACTCGGAGAGTGATCGAAACGA
CTCCGATGTTGTGCCTCCCTCCATGGCGAATCAGGAACAGGCTGAAATGC
TGAAACGAATGTGGAATCTTAACTCTTTTGACAAGAACGAATAA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+

>Gcaud2901.t1 ID=Gcaud2901.t1|Name=Gcaud2901.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=744bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:23614..24357+ (Gracilaria caudata M_176_S67 male)
ATGACCTCTAATCGCTCTCAACAATCGCTTCCGGTCTGGCGTCGCGTCCT
CGCCGTAACTACTATGTCTGCATCAATGCTGTTCACTCCCTTACCTCTCT
CACGACAACGTCCGCAAAACACTTTCCACTTCCCCACCCCCCCAACCGCT
CTCGCTGCCCCGGCCAAACGCGCCGCCAGGTCTACTACCAATACTTCTGA
TGTCGAAACTGCATTCATGACGCTGGCGGCTGTCTCTCTGGGAGGACTTG
TAATGCGAGCAATTGTGCGCTCCAGCCAGGACGACGAGGCGTATCGCAAG
AAAGTGCTTGAGGATTCCAAACGTTTGCAGGAAGAGGAGAATCTGAGAGC
ATTGCGCATCAAACGTACGGAGATGGAGGCTGTTGAAAACGACGAAACTT
CTGTAGACGACGACGACTTCATGAAAGCATTCAGAGAACGAGTATCAGAT
TTGCAGACCGAGGATCAACAAGAGCCGAGCGAAGACAAGGATGCCACTGA
AAAATATGGCAAGCAAGAACTCGATTTGGTAAACACTCAAGATCGCGGAA
CAGGGAGCGCTGTACTGGACAAGCCAGATAACGAAAGTCCCACTGCTCCG
ACTGCATCACAATCTGACCAAACTCAAAACTCGGAGAGTGATCGAAACGA
CTCCGATGTTGTGCCTCCCTCCATGGCGAATCAGGAACAGGCTGAAATGC
TGAAACGAATGTGGAATCTTAACTCTTTTGACAAGAACGAATAA