Gcaud2884.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2884.t1
Unique NameGcaud2884.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length95
Homology
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A2V3IJU4_9FLOR (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 107 bits (268), Expect = 5.690e-28
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 MLLSNFVPHGATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLHAC 94
            MLL  FVPHGA  ++I  LP E+V                    RGDKCAICL PYEQG+++R L C+H FH ECVD WL++RSLCP+CK HAC
Sbjct:   61 MLLGIFVPHGACKTMIDKLPLEIVGEEQDDIESVVIPVK-----RGDKCAICLGPYEQGESVRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC 149          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A2V3IFI0_9FLOR (RING finger protein 44 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI0_9FLOR)

HSP 1 Score: 100 bits (249), Expect = 4.290e-25
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 MLLSNFVPHGATDSVIRALPTEVV-----EHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLHA 93
            MLLSNFV HG + S+I ALPTE V      H +P            + H   KCAICLAPY+  +T+RRLPC+H FH +CVD WL +R+ CP+CK HA
Sbjct:   60 MLLSNFVQHGLSQSLINALPTETVCSPSNPHQSPSDSHLS------SPH---KCAICLAPYQPRETVRRLPCNHPFHAQCVDLWLNKRNSCPICKAHA 148          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A7S1QQM9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QQM9_ALECA)

HSP 1 Score: 73.9 bits (180), Expect = 3.190e-15
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 0
Query:   10 GATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            GA D  I ALPT + E                    G  C IC+  +E+GD LR LPC HLFH++CVD WLK  S+CP C+
Sbjct:   25 GAEDDAIEALPTRLYEGGDSSKAGG----------EGTNCQICMEDFEEGDELRTLPCFHLFHSKCVDQWLKVNSICPTCR 95          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A7S0QVM1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVM1_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 7.920e-15
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 0
Query:    8 PHGATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            PH  T S ++A+P  VVE+                +   + C ICL  + +GD LRRLPC H FH  C+D WL RRS+CPVCK
Sbjct:   41 PHRLTPSEVKAIP--VVEYEGAEEG----------EEGAELCTICLDDFAKGDQLRRLPCRHHFHVTCIDEWLGRRSMCPVCK 111          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A6P7V0W2_IXOSC (E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7V0W2_IXOSC)

HSP 1 Score: 73.6 bits (179), Expect = 4.050e-14
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 0
Query:   47 DKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLH 92
            +KC+ICL  + + DTLR+LPC HLFH+ CV +WL+R ++CPVC+ H
Sbjct:  135 EKCSICLRTFREADTLRQLPCGHLFHSRCVTSWLRRNNICPVCRTH 180          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A835PV35_VANPL (RING-type domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PV35_VANPL)

HSP 1 Score: 75.5 bits (184), Expect = 6.720e-14
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   10 GATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            GATD+ I +LP  V++++A                  + CA+CL     GDT+R LPC H FH EC+D WL+R+ +CP+CK
Sbjct:  672 GATDTQINSLPLSVIQNAASE----------------EACAVCLETPSLGDTIRHLPCLHKFHKECIDTWLRRKKMCPICK 736          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A0D9W730_9ORYZ (RING-type domain-containing protein n=5 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9W730_9ORYZ)

HSP 1 Score: 74.7 bits (182), Expect = 1.260e-13
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0
Query:    4 SNFVPHGATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            +N    GA++S I  LP  VV+                + +  + CA+CL     GDT+RRLPC H+FH EC+D WL+R+ LCPVCK
Sbjct:  739 NNHQHAGASESQINNLPQSVVQ----------------SNNIEEPCAVCLENPSVGDTIRRLPCFHMFHKECIDEWLRRKKLCPVCK 809          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A0L0DPS5_THETB (RING-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPS5_THETB)

HSP 1 Score: 73.9 bits (180), Expect = 1.460e-13
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 0
Query:    7 VPHGATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDK--CAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            VP GA+D+ I ALPT VV  SAP                GD   C +CL+    G   + LPC H+FHT+C+D WL+R S CP+CK
Sbjct:  250 VPRGASDAAIDALPTFVVGQSAPPTSS------------GDTLTCVVCLSELVAGQAAKTLPCLHVFHTQCIDEWLRRVSNCPMCK 323          
BLAST of Gcaud2884.t1 vs. uniprot
Match: J3LZI3_ORYBR (RING-type domain-containing protein n=3 Tax=Oryza brachyantha TaxID=4533 RepID=J3LZI3_ORYBR)

HSP 1 Score: 74.3 bits (181), Expect = 1.700e-13
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0
Query:    4 SNFVPHGATDSVIRALPTEVVEHSAPXXXXXXXXXXXXTQHRGDKCAICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCK 90
            +N    GA++S I  LP  VV+                + +  + CA+CL     GDT+RRLPC H+FH EC+D WL+R+ LCPVCK
Sbjct:  620 NNHQHAGASESQINNLPQSVVQ----------------SNNIEEPCAVCLENPSIGDTIRRLPCFHMFHKECIDEWLRRKKLCPVCK 690          
BLAST of Gcaud2884.t1 vs. uniprot
Match: A0A0P0YC54_ORYSJ (Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepID=A0A0P0YC54_ORYSJ)

HSP 1 Score: 70.9 bits (172), Expect = 1.880e-13
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   46 GDKCAICLAPYEQGDTLRRLP-CDHLFHTECVDAWLKRRSLCPVCK 90
            G  CA+CLA YE GD LRRLP C H FH  CVD WL+RR  CPVC+
Sbjct:   89 GTGCAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCR 134          
The following BLAST results are available for this feature:
BLAST of Gcaud2884.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJU4_9FLOR5.690e-2853.19E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
A0A2V3IFI0_9FLOR4.290e-2551.02RING finger protein 44 n=1 Tax=Gracilariopsis chor... [more]
A0A7S1QQM9_ALECA3.190e-1543.21Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0QVM1_9CHLO7.920e-1543.37Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A6P7V0W2_IXOSC4.050e-1456.52E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Ix... [more]
A0A835PV35_VANPL6.720e-1440.74RING-type domain-containing protein n=1 Tax=Vanill... [more]
A0A0D9W730_9ORYZ1.260e-1341.38RING-type domain-containing protein n=5 Tax=Leersi... [more]
A0A0L0DPS5_THETB1.460e-1344.19RING-type domain-containing protein n=1 Tax=Thecam... [more]
J3LZI3_ORYBR1.700e-1341.38RING-type domain-containing protein n=3 Tax=Oryza ... [more]
A0A0P0YC54_ORYSJ1.880e-1365.22Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 49..89
e-value: 1.2E-7
score: 41.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 47..90
e-value: 1.0E-14
score: 54.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 49..90
score: 12.533537
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 4..93
e-value: 3.8E-21
score: 76.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..43
NoneNo IPR availablePANTHERPTHR45931:SF3SI:CH211-59O9.10coord: 8..90
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 8..90
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 43..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_637_length_20512_cov_3.841634contigNODE_637_length_20512_cov_3.841634:493..879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1Gcaud2884.t1Gracilaria caudata M_176_S67 malemRNANODE_637_length_20512_cov_3.841634 493..879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=95bp
MLLSNFVPHGATDSVIRALPTEVVEHSAPPDSTEATPPPSSTQHRGDKCA
ICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLHAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD