Gcaud2884.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2884.t1
Unique NameGcaud2884.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_637_length_20512_cov_3.841634contigNODE_637_length_20512_cov_3.841634:493..879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR04G14940.3
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
Evalue1.61e-14
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37IKX@33090|Viridiplantae,3GGWM@35493|Streptophyta,3KSZD@4447|Liliopsida,3I5S3@38820|Poales
DescriptionRING-H2 zinc finger domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2884Gcaud2884Gracilaria caudata M_176_S67 malegeneNODE_637_length_20512_cov_3.841634 493..879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1Gcaud2884.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_637_length_20512_cov_3.841634 493..879 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1.start1Gcaud2884.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_637_length_20512_cov_3.841634 493..495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1.CDS1Gcaud2884.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_637_length_20512_cov_3.841634 493..714 +
Gcaud2884.t1.CDS2Gcaud2884.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_637_length_20512_cov_3.841634 817..879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1.exon1Gcaud2884.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_637_length_20512_cov_3.841634 493..714 +
Gcaud2884.t1.exon2Gcaud2884.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_637_length_20512_cov_3.841634 817..879 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1.intron1Gcaud2884.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_637_length_20512_cov_3.841634 715..816 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2884.t1.stop1Gcaud2884.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_637_length_20512_cov_3.841634 877..879 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=95bp
MLLSNFVPHGATDSVIRALPTEVVEHSAPPDSTEATPPPSSTQHRGDKCA
ICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLHAC*
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spliced messenger RNA

>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:493..879+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGTCCAATTTCGTGCCACACGGCGCCACCGATTCCGTCATCCG
CGCCCTACCCACGGAGGTGGTCGAGCATTCCGCGCCCCCCGACTCTACCG
AGGCCACGCCGCCCCCATCATCAACTCAACACAGAGGTGATAAATGCGCC
ATTTGTCTCGCCCCGTACGAGCAGGGTGACACTTTGCGTCGACTTCCATG
CGACCATTTGTTCCACACCGAATGTGTCGATGCATGGCTCAAGAGAAGGT
CTTTATGCCCTGTGTGCAAACTTCACGCGTGTTGA
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protein sequence of Gcaud2884.t1

>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=95bp
MLLSNFVPHGATDSVIRALPTEVVEHSAPPDSTEATPPPSSTQHRGDKCA
ICLAPYEQGDTLRRLPCDHLFHTECVDAWLKRRSLCPVCKLHAC*
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mRNA from alignment at NODE_637_length_20512_cov_3.841634:493..879+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:493..879+ (Gracilaria caudata M_176_S67 male)
ATGTTGTTGTCCAATTTCGTGCCACACGGCGCCACCGATTCCGTCATCCG
CGCCCTACCCACGGAGGTGGTCGAGCATTCCGCGCCCCCCGACTCTACCG
AGGCCACGCCGCCCCCATCATCAACTCAACACAGAGGTGATAAATGCGCC
ATTTGTCTCGCCCCGTACGAGCAGGGTGACACTTTGCGTCGACTTCCATG
CGACCATTTGTTCCACACCGAAGTACGTTTTATCACTTCCACCGCATTCG
TGAATCAGCCCTCATATTCCACCTCAAAAAAGCTTGCTGACATACTTTTC
ATCTGCGTGGCTCGATGCTTGCAGTGTGTCGATGCATGGCTCAAGAGAAG
GTCTTTATGCCCTGTGTGCAAACTTCACGCGTGTTGA
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Coding sequence (CDS) from alignment at NODE_637_length_20512_cov_3.841634:493..879+

>Gcaud2884.t1 ID=Gcaud2884.t1|Name=Gcaud2884.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=285bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:493..879+ (Gracilaria caudata M_176_S67 male)
ATGTTGTTGTCCAATTTCGTGCCACACGGCGCCACCGATTCCGTCATCCG
CGCCCTACCCACGGAGGTGGTCGAGCATTCCGCGCCCCCCGACTCTACCG
AGGCCACGCCGCCCCCATCATCAACTCAACACAGAGGTGATAAATGCGCC
ATTTGTCTCGCCCCGTACGAGCAGGGTGACACTTTGCGTCGACTTCCATG
CGACCATTTGTTCCACACCGAATGTGTCGATGCATGGCTCAAGAGAAGGT
CTTTATGCCCTGTGTGCAAACTTCACGCGTGTTGA
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