Gcaud2880.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2880.t1
Unique NameGcaud2880.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length96
Homology
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A2V3J6U9_9FLOR (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U9_9FLOR)

HSP 1 Score: 174 bits (440), Expect = 7.650e-55
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 0
Query:    1 MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPP 94
            MSSK S PVPQILPLELVDKCIGSRIWIIMRGEKELVG LRGFDEFVN++LEDVTEYEYS EGT+KKQL+KILLNGSNVCLLVPGSEGP+KS P
Sbjct:    1 MSSKHSNPVPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNMILEDVTEYEYSAEGTSKKQLEKILLNGSNVCLLVPGSEGPEKSVP 94          
BLAST of Gcaud2880.t1 vs. uniprot
Match: F0ZMN3_DICPU (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMN3_DICPU)

HSP 1 Score: 129 bits (324), Expect = 3.420e-37
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 0
Query:    1 MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGP 89
            MS + ST + QILPLEL++KCIGSRIWI M+ +KE VG L GFD +VNI L+DVTEYEY+PEG    +LD ILLNG++VCLLVPG EGP
Sbjct:    1 MSEEASTQIEQILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTIKLDNILLNGNHVCLLVPGGEGP 89          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A146H867_9AGAR (U6 snRNA-associated Sm-like protein LSm5 n=5 Tax=Mycena TaxID=41247 RepID=A0A146H867_9AGAR)

HSP 1 Score: 129 bits (323), Expect = 3.730e-37
Identity = 55/80 (68.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPD 90
            QILPLEL+DKCIGSRIW+IM+ ++E  G L GFD+FVN+VLEDVTEYE +P+G TKK L++ LLNG+N+C+L+PGSEGP+
Sbjct:    4 QILPLELIDKCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGRTKKSLEQTLLNGNNICMLIPGSEGPN 83          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A5J4YIW5_PORPP (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIW5_PORPP)

HSP 1 Score: 129 bits (323), Expect = 6.350e-37
Identity = 56/83 (67.47%), Postives = 73/83 (87.95%), Query Frame = 0
Query:   12 ILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPP 94
            ILPLE++D+CIGSRIWI+MRGE+E VG LRGFD+FVN+VLEDVTEYE + +G   ++LD+I+LNG ++C++VPGSEGPD S P
Sbjct:   18 ILPLEMIDRCIGSRIWIVMRGEREFVGTLRGFDDFVNVVLEDVTEYEETSDGLQVRKLDQIMLNGIHICMMVPGSEGPDHSIP 100          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A6B2LTU4_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LTU4_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 2.510e-36
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    1 MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGT-TKKQLDKILLNGSNVCLLVPGSEGP 89
            M    + P+ Q+LPLEL+DKCIG ++WIIM+G+KE+VG L GFD+FVN+VLEDVTE+E S +G  T+ +LD+ILLNG+NVCLLVPG EGP
Sbjct:    1 MDPNANAPISQLLPLELIDKCIGHKLWIIMKGDKEIVGTLMGFDDFVNMVLEDVTEFETSADGRITETKLDQILLNGNNVCLLVPGGEGP 90          
BLAST of Gcaud2880.t1 vs. uniprot
Match: M2W0E5_GALSU (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W0E5_GALSU)

HSP 1 Score: 126 bits (316), Expect = 5.190e-36
Identity = 53/87 (60.92%), Postives = 74/87 (85.06%), Query Frame = 0
Query:    6 STPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKS 92
            S  +P +LPLELVDKCIGS+IW++M+ +KE  GILRGFD+FVN+VLEDV+EYE++ EG  +  LD+ILLNG+N+C+L+PG  GP+++
Sbjct:    2 SETIPPVLPLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGLIRTHLDQILLNGNNICVLIPGGAGPNET 88          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A7S1ERV8_9RHOD (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERV8_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 6.230e-36
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 0
Query:   12 ILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKS 92
            +LPLEL+DKCIGS+IWIIMR EKE VG LRGFDEFVN+VLEDVTE+E + EG    +LD+I LNG+NVC+L+PGSEGP  S
Sbjct:   19 VLPLELIDKCIGSKIWIIMRNEKEFVGTLRGFDEFVNLVLEDVTEFESTMEGVLVNKLDQIFLNGNNVCMLLPGSEGPTYS 99          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A067QBH7_9AGAM (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Agaricomycetidae TaxID=452333 RepID=A0A067QBH7_9AGAM)

HSP 1 Score: 125 bits (315), Expect = 6.370e-36
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDK 91
            QILPLEL+D+CIGSRIW+IM+ E+E  G L GFD+FVN+VLEDVTEYE +PEGT K +L++ LLNG+N+C+L+PGS GP++
Sbjct:    4 QILPLELIDRCIGSRIWVIMKNEREFSGTLLGFDDFVNMVLEDVTEYETTPEGTKKTKLNQTLLNGNNICMLIPGSSGPEE 84          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A1Q3EFV7_LENED (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EFV7_LENED)

HSP 1 Score: 125 bits (315), Expect = 6.370e-36
Identity = 52/80 (65.00%), Postives = 70/80 (87.50%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPD 90
            Q+LPLEL+DKCIGSRIW++M+ E+E  G L GFD+FVN+VLEDVTEYE +P+GT K +L + LLNG+N+C+L+PGS+GP+
Sbjct:    4 QVLPLELIDKCIGSRIWVVMKSEREFTGTLLGFDDFVNMVLEDVTEYEMTPQGTKKTKLGQTLLNGNNICMLIPGSDGPE 83          
BLAST of Gcaud2880.t1 vs. uniprot
Match: A0A0C3QNA7_9AGAM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QNA7_9AGAM)

HSP 1 Score: 125 bits (315), Expect = 7.370e-36
Identity = 55/82 (67.07%), Postives = 71/82 (86.59%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIVLEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKS 92
            QILPLEL+D+CIGSRIW+IM+ E+E  G+L GFD+FVN+VLEDVTEYE +PEG    +L + LLNG+N+C+LVPGSEGPD++
Sbjct:    4 QILPLELIDRCIGSRIWVIMKNEREFSGLLLGFDDFVNMVLEDVTEYEVTPEGRKATKLAQTLLNGNNICMLVPGSEGPDEA 85          
The following BLAST results are available for this feature:
BLAST of Gcaud2880.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6U9_9FLOR7.650e-5589.36U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=G... [more]
F0ZMN3_DICPU3.420e-3767.42U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=D... [more]
A0A146H867_9AGAR3.730e-3768.75U6 snRNA-associated Sm-like protein LSm5 n=5 Tax=M... [more]
A0A5J4YIW5_PORPP6.350e-3767.47U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A6B2LTU4_9EUKA2.510e-3664.44U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
M2W0E5_GALSU5.190e-3660.92U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=G... [more]
A0A7S1ERV8_9RHOD6.230e-3671.60U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067QBH7_9AGAM6.370e-3666.67U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=A... [more]
A0A1Q3EFV7_LENED6.370e-3665.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=L... [more]
A0A0C3QNA7_9AGAM7.370e-3667.07U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 16..84
e-value: 1.1E-20
score: 84.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 17..84
e-value: 8.6E-21
score: 73.4
NoneNo IPR availableGENE3D2.30.30.100coord: 13..88
e-value: 8.8E-27
score: 94.7
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 7..91
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 11..85
e-value: 1.42771E-45
score: 139.302
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1461_length_10463_cov_4.292711contigNODE_1461_length_10463_cov_4.292711:9682..10063 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1Gcaud2880.t1Gracilaria caudata M_176_S67 malemRNANODE_1461_length_10463_cov_4.292711 9682..10063 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=96bp
MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIV
LEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf