Gcaud2880.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2880.t1
Unique NameGcaud2880.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length96
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1461_length_10463_cov_4.292711contigNODE_1461_length_10463_cov_4.292711:9682..10063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003288678.1
PFAMsLSM
Max annot lvl554915|Amoebozoa
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005688,GO:0005730,GO:0005732,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901575,GO:1990726,GO:1990904
Evalue2.09e-38
EggNOG OGsCOG1958@1|root,KOG1775@2759|Eukaryota,3X9AT@554915|Amoebozoa
DescriptionsnRNP Sm proteins
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2880Gcaud2880Gracilaria caudata M_176_S67 malegeneNODE_1461_length_10463_cov_4.292711 9682..10063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1Gcaud2880.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1461_length_10463_cov_4.292711 9682..10063 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1.stop1Gcaud2880.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1461_length_10463_cov_4.292711 9682..9684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1.CDS1Gcaud2880.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1461_length_10463_cov_4.292711 9682..9822 -
Gcaud2880.t1.CDS2Gcaud2880.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1461_length_10463_cov_4.292711 9917..10063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1.exon1Gcaud2880.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1461_length_10463_cov_4.292711 9682..9822 -
Gcaud2880.t1.exon2Gcaud2880.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1461_length_10463_cov_4.292711 9917..10063 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1.intron1Gcaud2880.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1461_length_10463_cov_4.292711 9823..9916 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2880.t1.start1Gcaud2880.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1461_length_10463_cov_4.292711 10061..10063 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=96bp
MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIV
LEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPPY*
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spliced messenger RNA

>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=288bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:9682..10063- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGAAGGAGTCGACTCCCGTTCCTCAAATCCTTCCTCTTGAGCT
TGTCGACAAATGCATCGGTAGTCGCATCTGGATCATTATGCGCGGTGAGA
AGGAACTGGTCGGTATTTTACGAGGCTTTGACGAATTCGTAAACATCGTT
CTCGAGGACGTTACTGAATATGAATACTCACCGGAAGGAACTACGAAGAA
GCAGCTAGATAAGATTTTGTTGAATGGAAGCAACGTCTGTCTGCTCGTTC
CGGGATCAGAAGGCCCAGACAAATCACCGCCTTATTGA
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protein sequence of Gcaud2880.t1

>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=96bp
MSSKESTPVPQILPLELVDKCIGSRIWIIMRGEKELVGILRGFDEFVNIV
LEDVTEYEYSPEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPPY*
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mRNA from alignment at NODE_1461_length_10463_cov_4.292711:9682..10063-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=382bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:9682..10063- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGAAGGAGTCGACTCCCGTTCCTCAAATCCTTCCTCTTGAGCT
TGTCGACAAATGCATCGGTAGTCGCATCTGGATCATTATGCGCGGTGAGA
AGGAACTGGTCGGTATTTTACGAGGCTTTGACGAATTCGTAAACATCGTA
AGTTGCACATTAAGCGCCTAATTTCCACAGTGGCGGTATCATCGCTTATT
CATTGCTCTCACTAACCAAGCCTCATGCCTCTCGATTTCAGGTTCTCGAG
GACGTTACTGAATATGAATACTCACCGGAAGGAACTACGAAGAAGCAGCT
AGATAAGATTTTGTTGAATGGAAGCAACGTCTGTCTGCTCGTTCCGGGAT
CAGAAGGCCCAGACAAATCACCGCCTTATTGA
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Coding sequence (CDS) from alignment at NODE_1461_length_10463_cov_4.292711:9682..10063-

>Gcaud2880.t1 ID=Gcaud2880.t1|Name=Gcaud2880.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=288bp|location=Sequence derived from alignment at NODE_1461_length_10463_cov_4.292711:9682..10063- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGAAGGAGTCGACTCCCGTTCCTCAAATCCTTCCTCTTGAGCT
TGTCGACAAATGCATCGGTAGTCGCATCTGGATCATTATGCGCGGTGAGA
AGGAACTGGTCGGTATTTTACGAGGCTTTGACGAATTCGTAAACATCGTT
CTCGAGGACGTTACTGAATATGAATACTCACCGGAAGGAACTACGAAGAA
GCAGCTAGATAAGATTTTGTTGAATGGAAGCAACGTCTGTCTGCTCGTTC
CGGGATCAGAAGGCCCAGACAAATCACCGCCTTATTGA
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