Gcaud2820.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2820.t1
Unique NameGcaud2820.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length108
Homology
BLAST of Gcaud2820.t1 vs. uniprot
Match: R7QKZ6_CHOCR (Protein transport protein Sec24-like n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKZ6_CHOCR)

HSP 1 Score: 149 bits (377), Expect = 1.010e-39
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 0
Query:    1 MSAVADGSTFPSIPTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            MS  A   + P +P SNSD+I+VDDGSARLRFMR TTN+I S+PSL+S S +PLAV++ PFAN  PGE PVP+ DFS   +GGPLRCERC GYANPGFKFMSGGSQF
Sbjct:  272 MSLGASSGSMPILPNSNSDVITVDDGSARLRFMRMTTNSIGSEPSLMSKSGVPLAVVMQPFANTVPGEAPVPVVDFSNPHVGGPLRCERCYGYANPGFKFMSGGSQF 378          
BLAST of Gcaud2820.t1 vs. uniprot
Match: A0A7S1XG20_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XG20_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 2.580e-25
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P +NSD I  D GSA  RFMR TTNAIA + SL + S++PL +++ PFANP  GE  VP  D +    GGPLRC RC  YANPGF+F+SGGS F
Sbjct:  343 PFANSDYIGFDCGSATPRFMRLTTNAIAREGSLHAKSSIPLGLVLCPFANPAAGESQVPTVDLTTASGGGPLRCSRCKAYANPGFRFLSGGSSF 436          
BLAST of Gcaud2820.t1 vs. uniprot
Match: A0A7S2Z9L5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9L5_9RHOD)

HSP 1 Score: 107 bits (267), Expect = 6.950e-25
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 0
Query:    3 AVADGSTFPSI---PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            +VADGS  P +   P S +D I VD GS   RFMR T N+I  D S+   S++PL +++TPFA+PEPGE PV   D +    GGPLRC +CNGYANPGF+F+  G++F
Sbjct:  219 SVADGSA-PGVGPPPASRNDFIGVDTGSCTPRFMRLTVNSIPVDSSMQGTSSIPLGLILTPFADPEPGEAPVLDVDLTTAGGGGPLRCPKCNGYANPGFRFVDSGNKF 325          
BLAST of Gcaud2820.t1 vs. uniprot
Match: A0A5J4YZA8_PORPP (Protein transport protein Sec24-like CEF n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZA8_PORPP)

HSP 1 Score: 94.7 bits (234), Expect = 1.980e-20
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P SNS  I +DDGSA  RF+R +TNA+A   ++ + SA+P   ++ PFA   PGE  V   D      GGPLRC RC  YANPGFKF+SGG++F
Sbjct:  218 PRSNSAYIGIDDGSAIPRFVRLSTNAVAVSRAMHAKSAIPFGALLMPFARVAPGEYNVREVDMRTMFGGGPLRCSRCRAYANPGFKFLSGGAKF 311          
BLAST of Gcaud2820.t1 vs. uniprot
Match: A0A7S1EUY7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUY7_9RHOD)

HSP 1 Score: 92.8 bits (229), Expect = 6.420e-20
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P +N D I  D+GSA LRF+R +T+ +A   +L S S +PL  +  PF++ EPGE    + D      GGPLRC+RC  YANPGF+F+ GG +F
Sbjct:  178 PNANMDYIGTDEGSAMLRFVRFSTSCVAPTAALQSKSGIPLGAVTIPFSDVEPGEYEPRVVDLRTHSAGGPLRCKRCQCYANPGFRFLGGGGKF 271          
BLAST of Gcaud2820.t1 vs. uniprot
Match: A0A1X6NUN7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUN7_PORUM)

HSP 1 Score: 89.7 bits (221), Expect = 1.120e-18
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P SN+D ++ D GS  +R+ R TT +I ++P++++ SALPL V++ PFA+   GE  +P  D       GPLRC+RC  YANPGF+F S G+++
Sbjct:  131 PLSNADFVAEDQGSCTVRYQRLTTGSIPAEPAVMTKSALPLGVVLMPFADAAMGEAAIPTVDLP----NGPLRCDRCRAYANPGFRFTSAGAKY 220          
BLAST of Gcaud2820.t1 vs. uniprot
Match: M2Y272_GALSU (Protein transport protein Sec24-like protein isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y272_GALSU)

HSP 1 Score: 77.8 bits (190), Expect = 1.740e-14
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 0
Query:   13 IPTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            +P+  +D ISVD G A  RF R T + + ++ S++S   LPLA +  PF+ P  GE    + D  +    GPLRC RC GYANPGF+F  GG +F
Sbjct:  310 VPSFIADFISVDTGVASPRFARVTLSCLPTEKSVLSQVNLPLAAVFQPFSVPVEGEQEPRLVDLGSY---GPLRCLRCQGYANPGFRFTDGGRKF 401          
BLAST of Gcaud2820.t1 vs. uniprot
Match: K3ZH02_SETIT (Uncharacterized protein n=10 Tax=Paniceae TaxID=147428 RepID=K3ZH02_SETIT)

HSP 1 Score: 77.4 bits (189), Expect = 2.370e-14
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P ++S+ I  D G+   R MR T N I     L++ SA+PLA+M+ PFA P P E P+ + DF      GP+RC RC  Y NP  KF+  G  F
Sbjct:  353 PAASSEFIVKDTGNCSPRLMRCTVNQIPCTGDLLTTSAMPLALMVQPFALPHPSEEPIQLVDFGEM---GPIRCSRCKAYINPFMKFVDQGRHF 443          
BLAST of Gcaud2820.t1 vs. uniprot
Match: I1R612_ORYGL (Uncharacterized protein n=3 Tax=Oryza TaxID=4527 RepID=I1R612_ORYGL)

HSP 1 Score: 76.3 bits (186), Expect = 5.900e-14
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P ++S+ I  D G+   R MR T N I     +++ SA+PLA+M+ PFA P P E P+ + DF      GP+RC RC  Y NP  +F+  G  F
Sbjct:  152 PAASSEFIVKDTGNCNPRLMRCTLNQIPCTGDILTTSAMPLALMVQPFALPHPSEEPIQLVDFGGM---GPIRCSRCKAYINPFMRFIDQGKHF 242          
BLAST of Gcaud2820.t1 vs. uniprot
Match: B9GCX4_ORYSJ (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=B9GCX4_ORYSJ)

HSP 1 Score: 76.3 bits (186), Expect = 6.000e-14
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0
Query:   14 PTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLSALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKFMSGGSQF 107
            P ++S+ I  D G+   R MR T N I     +++ SA+PLA+M+ PFA P P E P+ + DF      GP+RC RC  Y NP  +F+  G  F
Sbjct:  307 PAASSEFIVKDTGNCNPRLMRCTLNQIPCTGDILTTSAMPLALMVQPFALPHPSEEPIQLVDFGGM---GPIRCSRCKAYINPFMRFIDQGKHF 397          
The following BLAST results are available for this feature:
BLAST of Gcaud2820.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QKZ6_CHOCR1.010e-3969.16Protein transport protein Sec24-like n=1 Tax=Chond... [more]
A0A7S1XG20_9RHOD2.580e-2557.45Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S2Z9L5_9RHOD6.950e-2551.85Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YZA8_PORPP1.980e-2051.06Protein transport protein Sec24-like CEF n=1 Tax=P... [more]
A0A7S1EUY7_9RHOD6.420e-2046.81Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1X6NUN7_PORUM1.120e-1844.68Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2Y272_GALSU1.740e-1444.21Protein transport protein Sec24-like protein isofo... [more]
K3ZH02_SETIT2.370e-1442.55Uncharacterized protein n=10 Tax=Paniceae TaxID=14... [more]
I1R612_ORYGL5.900e-1440.43Uncharacterized protein n=3 Tax=Oryza TaxID=4527 R... [more]
B9GCX4_ORYSJ6.000e-1440.43Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1670coord: 28..70
e-value: 6.7E-22
score: 79.1
NoneNo IPR availableGENE3D2.30.30.380coord: 23..107
e-value: 6.7E-22
score: 79.1
NoneNo IPR availablePANTHERPTHR13803:SF38SECRETORY 24CD, ISOFORM Ccoord: 13..107
NoneNo IPR availablePANTHERPTHR13803SEC24-RELATED PROTEINcoord: 13..107
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 12..64
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 80..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5009_length_1837_cov_11.806415contigNODE_5009_length_1837_cov_11.806415:1033..1356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2820.t1Gcaud2820.t1Gracilaria caudata M_176_S67 malemRNANODE_5009_length_1837_cov_11.806415 1033..1356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2820.t1 ID=Gcaud2820.t1|Name=Gcaud2820.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=108bp
MSAVADGSTFPSIPTSNSDLISVDDGSARLRFMRPTTNAIASDPSLISLS
ALPLAVMITPFANPEPGEMPVPIADFSAKQMGGPLRCERCNGYANPGFKF
MSGGSQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036174Znf_Sec23_Sec24_sf