Gcaud2764.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2764.t1
Unique NameGcaud2764.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length67
Homology
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BLAST of Gcaud2764.t1 vs. uniprot
Match: A0A2V3IFJ7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFJ7_9FLOR)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0 
Query:    3 LKPYQCETCSKSFGYKGDLAKHMASHSGEXXXXXXXXXXRFARNFYVKRHIETIHEKK 60
            +KPYQC+ CSKSFGYKGDL KHM+SH+G+ XXXXXXXXX  ARNFYVKRHIET+HEKK
Sbjct:    1 MKPYQCDLCSKSFGYKGDLTKHMSSHTGDKXXXXXXXXXXXARNFYVKRHIETVHEKK 58
The following BLAST results are available for this feature:
BLAST of Gcaud2764.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IFJ7_9FLOR1.130e-2181.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 34..57
e-value: 0.63
score: 19.1
coord: 6..28
e-value: 3.4E-4
score: 29.9
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 34..57
e-value: 0.0015
score: 18.9
coord: 6..28
e-value: 2.9E-6
score: 27.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 36..57
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 8..28
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 6..33
score: 15.645834
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 34..62
score: 10.013613
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 30..61
e-value: 6.6E-10
score: 40.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 4..29
e-value: 1.1E-13
score: 53.0
NoneNo IPR availablePANTHERPTHR24390:SF94TRANSCRIPTION FACTOR E4F1coord: 4..58
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 4..58
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 2..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_979_length_15560_cov_4.680264contigNODE_979_length_15560_cov_4.680264:1405..1966 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1Gcaud2764.t1Gracilaria caudata M_176_S67 malemRNANODE_979_length_15560_cov_4.680264 1405..1966 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=67bp
MGLKPYQCETCSKSFGYKGDLAKHMASHSGEKPYSCYLCGARFARNFYVK
RHIETIHEKKGQSSSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf