Gcaud2764.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2764.t1
Unique NameGcaud2764.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_979_length_15560_cov_4.680264contigNODE_979_length_15560_cov_4.680264:1405..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC008314-PA
PFAMszf-C2H2
Max annot lvl33208|Metazoa
Evalue2.22e-07
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A8NU@33154|Opisthokonta,3BU2H@33208|Metazoa,3DAZR@33213|Bilateria,4214C@6656|Arthropoda,3SPS0@50557|Insecta
DescriptionZinc finger, C2H2 type
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2764Gcaud2764Gracilaria caudata M_176_S67 malegeneNODE_979_length_15560_cov_4.680264 1405..1966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1Gcaud2764.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_979_length_15560_cov_4.680264 1405..1966 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1.start1Gcaud2764.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_979_length_15560_cov_4.680264 1405..1407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1.CDS1Gcaud2764.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_979_length_15560_cov_4.680264 1405..1462 +
Gcaud2764.t1.CDS2Gcaud2764.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_979_length_15560_cov_4.680264 1604..1614 +
Gcaud2764.t1.CDS3Gcaud2764.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_979_length_15560_cov_4.680264 1720..1800 +
Gcaud2764.t1.CDS4Gcaud2764.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_979_length_15560_cov_4.680264 1916..1966 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1.exon1Gcaud2764.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_979_length_15560_cov_4.680264 1405..1462 +
Gcaud2764.t1.exon2Gcaud2764.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_979_length_15560_cov_4.680264 1604..1614 +
Gcaud2764.t1.exon3Gcaud2764.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_979_length_15560_cov_4.680264 1720..1800 +
Gcaud2764.t1.exon4Gcaud2764.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_979_length_15560_cov_4.680264 1916..1966 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1.intron1Gcaud2764.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_979_length_15560_cov_4.680264 1463..1603 +
Gcaud2764.t1.intron2Gcaud2764.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_979_length_15560_cov_4.680264 1615..1719 +
Gcaud2764.t1.intron3Gcaud2764.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_979_length_15560_cov_4.680264 1801..1915 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2764.t1.stop1Gcaud2764.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_979_length_15560_cov_4.680264 1964..1966 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=67bp
MGLKPYQCETCSKSFGYKGDLAKHMASHSGEKPYSCYLCGARFARNFYVK
RHIETIHEKKGQSSSL*
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spliced messenger RNA

>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=201bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:1405..1966+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTGAAACCGTATCAGTGCGAGACGTGTTCCAAGTCGTTTGGGTA
CAAGGGAGACCTTGCGAAGCACATGGCGTCCCATTCTGGAGAGAAGCCGT
ATTCTTGTTATCTCTGTGGCGCCAGGTTTGCCAGGAACTTCTACGTCAAA
AGGCATATAGAAACGATTCATGAGAAGAAGGGTCAATCTTCGTCGCTGTA
G
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protein sequence of Gcaud2764.t1

>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=67bp
MGLKPYQCETCSKSFGYKGDLAKHMASHSGEKPYSCYLCGARFARNFYVK
RHIETIHEKKGQSSSL*
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mRNA from alignment at NODE_979_length_15560_cov_4.680264:1405..1966+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:1405..1966+ (Gracilaria caudata M_176_S67 male)
ATGGGATTGAAACCGTATCAGTGCGAGACGTGTTCCAAGTCGTTTGGGTA
CAAGGGAGGTATGTGTTCTACTTTTTTTTTCGGTGGCTGTGCCGTGGGCA
CGAAGTGGCGGCATGATGCGACATGAGATTTGCTGACAGAGCGTGCGTTT
TGTTTTGTTGTGCGTTGGTTTGCATTGACGCGTGTTGGCTGTGGCGTAGA
CCTTGCGAAGGTGAGTTGGAAGCAATCTTTCGAAAGCCTTGTTGTGAGAT
CAAGCGTGGGGCCACTTCTTCTCTCTAACCGTTGTACTCTCACTTATGGC
GCTGCTTGACCGTAGCACATGGCGTCCCATTCTGGAGAGAAGCCGTATTC
TTGTTATCTCTGTGGCGCCAGGTTTGCCAGGAACTTCTACGTCAAAGTAA
GTGCCATCCCGATACACTATATCCCATTCGTTATTATGGCCTCTTTTTTT
TAATGAGGGAAAGCTAACCAGAAGGGAAAACGCTCATTCATTCATTCTTC
CTCACCTACAGAGGCATATAGAAACGATTCATGAGAAGAAGGGTCAATCT
TCGTCGCTGTAG
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Coding sequence (CDS) from alignment at NODE_979_length_15560_cov_4.680264:1405..1966+

>Gcaud2764.t1 ID=Gcaud2764.t1|Name=Gcaud2764.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=201bp|location=Sequence derived from alignment at NODE_979_length_15560_cov_4.680264:1405..1966+ (Gracilaria caudata M_176_S67 male)
ATGGGATTGAAACCGTATCAGTGCGAGACGTGTTCCAAGTCGTTTGGGTA
CAAGGGAGACCTTGCGAAGCACATGGCGTCCCATTCTGGAGAGAAGCCGT
ATTCTTGTTATCTCTGTGGCGCCAGGTTTGCCAGGAACTTCTACGTCAAA
AGGCATATAGAAACGATTCATGAGAAGAAGGGTCAATCTTCGTCGCTGTA
G
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