Gcaud2643.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2643.t1
Unique NameGcaud2643.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length220
Homology
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A2V3JA98_9FLOR (DNA replication complex GINS protein PSF3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JA98_9FLOR)

HSP 1 Score: 301 bits (772), Expect = 1.880e-101
Identity = 145/221 (65.61%), Postives = 177/221 (80.09%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIV--DVALPGVLVRAFAARCWGIADSAAFSGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGKRPREELGSPVTPSTRPRTS 219
            MEDYFSIDDILAG+H I TTF  +G+ LG LDP  V +WNA++  P++ +++P++D+ MP+GM VALP+WLA++L  RNF K++LPRCYGK  RQALRAD RSVDL +KC +Y+ALGV+LA+L+V  DV  PGVL+RAFAARCW IAD A FSGD+GA AMKG D LEC+LF + H +AVA RRWKERR DRIS       KRPREE+GSPVTPSTRPRTS
Sbjct:    1 MEDYFSIDDILAGNHCISTTFEEQGFLLGHLDPENVMDWNANNCNPDDYDNDPDLDRHMPKGMTVALPYWLAEALAARNFAKVQLPRCYGKSTRQALRADARSVDLRSKCDNYYALGVRLARLLVGDDVTFPGVLLRAFAARCWSIADMAVFSGDRGAHAMKGFDLLECDLFCDIHGIAVATRRWKERRGDRISGSGAHFRKRPREEIGSPVTPSTRPRTS 221          
BLAST of Gcaud2643.t1 vs. uniprot
Match: R7Q771_CHOCR (DNA replication complex GINS protein psf3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q771_CHOCR)

HSP 1 Score: 210 bits (535), Expect = 1.610e-65
Identity = 113/217 (52.07%), Postives = 147/217 (67.74%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSE-WNASHRTPEELEDNPNIDK-DMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSAAFSGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGKRPREE-LGSPVTPST 214
            MEDYFSIDDIL+ + RI+ TF  + + L  LDP G +  W+++ ++  E       D+ D+P G R+ALPFWLA SL  R    LELPRC+    R ALRAD R+V L  +C +++ALG+++AKL+ D  L   LVRAFA RCWGI DSA F+G +G  A++GL+  E +LF  AH + +A+RRWKERR DRI   + VLGKR REE  GSPVTPST
Sbjct:    1 MEDYFSIDDILSSEPRIYATFHVQAHQLAHLDPAGAAAVWSSNKQSSAE-------DRLDLPSGHRLALPFWLADSLAQRGVAALELPRCFATGARHALRADARAVRLQTRCPAFYALGLRIAKLVRDSRLSEALVRAFADRCWGIVDSAVFAGARGVAALEGLEEKERKLFFAAHGLDIALRRWKERRIDRIGMAHGVLGKRCREEGPGSPVTPST 210          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A0L0DJQ1_THETB (DNA replication complex GINS protein PSF3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJQ1_THETB)

HSP 1 Score: 95.1 bits (235), Expect = 8.950e-21
Identity = 72/205 (35.12%), Postives = 101/205 (49.27%), Query Frame = 0
Query:    4 YFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSAAFSGDKG-ALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGKRPREELG 207
            Y+ ID IL  D  +   F     +LG LDP           TP     +P+ID    QG    +P WLA SL  R+ V L  P  +G+  +  L AD + +++  KC  ++ LGV+LAKL  + ALP VL +AF  R   I D++   G    +  ++ L   E  LF   HA A  + R+K R +DR++A   V  KR R  LG
Sbjct:    3 YYDIDAILLDDQIVPAHFNTAAMDLGVLDPS----------TP-----SPHID----QGTETDIPLWLALSLAKRSIVTLRSPSFFGESFQAHLLADAQVLNIHDKCPFFYELGVKLAKLTGNWALPAVLKKAFHTRYLRIVDTSINLGAADYSEHIRKLTTAERNLFHLGHAAAAEVLRYKTRDTDRLAASAVVTRKRRRAALG 188          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A1X6NKH3_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKH3_PORUM)

HSP 1 Score: 92.4 bits (228), Expect = 1.870e-19
Identity = 67/217 (30.88%), Postives = 96/217 (44.24%), Query Frame = 0
Query:    2 EDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGV--SEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIV-DVALPGVLVRAFAARCWGIADSAAFSGDK------------------------GALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRI 191
            +DYF ID ILA    +F  F      L +LDP     S    +   P      P +   +P G+RV LP+WLA++L  R+ V LELPR Y  + R  L AD   V LA + S Y+  G +L  L+  +  L  +L  ++AAR W I D+A ++                           G   +  LD  E +L+  A   A+A   W+    DR+
Sbjct:    5 DDYFDIDAILATSDPVFCAFSVAADGLAYLDPASALASTLTPTSGLPTASAAVP-LTNTLPAGLRVGLPYWLAETLAERSLVTLELPRPYDGRARAELIADAPHVALADRASHYYRWGARLGGLLDGEAGLAPLLAASWAARAWRIVDAATYAASXXXXXXXXXXXXXXXXXXXXXXXXGGDGLLPKLDADERDLYFAARGAALAAAEWRRGAGDRV 220          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A0E9NME2_SAICN (DNA replication complex GINS protein PSF3 n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NME2_SAICN)

HSP 1 Score: 89.7 bits (221), Expect = 7.930e-19
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 0
Query:    2 EDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSA---AFSGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKE 185
             DY+ ID IL    +I +TF  E   LG+L                E   +PN  + +  G ++ LP WL++ L  + F  L LP  +  +VR AL+AD +SVDL A    ++ +GV+L  ++ D  L  VL   +  R   +AD A     + ++GA+ + GLD +E +LF+  H  A A+++W++
Sbjct:    5 NDYYDIDAILTDHQKIPSTFNFEIPGLGYL----------------ESPTDPN--QPLLAGTKLDLPLWLSELLAIQQFTDLHLPPPFSSRVRNALKADPKSVDLRAWSPHFYGVGVRLLGVVRDEELVQVLEATWRERVAVVADHAQNPTGAMEEGAVFLSGLDEMERQLFRIVHDSAKAMKQWQD 173          
BLAST of Gcaud2643.t1 vs. uniprot
Match: S2JRR5_MUCC1 (DNA replication complex GINS protein PSF3 n=4 Tax=Mucor TaxID=4830 RepID=S2JRR5_MUCC1)

HSP 1 Score: 83.6 bits (205), Expect = 1.920e-16
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDK-DMPQGMRVALPFWLAQSLLT-RNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIAD-SAAFSGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAM 194
            +++Y+SID ILA   +I    LH+                         E N N D  ++ +G RV LP+W+A+ L    + + +ELP+ Y  +VR  L A   SVD    C  ++  G +L  L+VD +L  VL +AF  R   + D S +     G   ++ LD  E EL++     A+   +W++R + RI  +
Sbjct:    3 LDEYYSIDSILAEQQKIPCITLHD----------------------YSKEANLNGDNSELKRGSRVELPYWIAKPLAQFTSLISIELPKTYSTKVRNVLDASPTSVDFKLLCPYFYLFGRKLLDLVVDDSLTSVLEKAFKTRLRDVMDFSQSIGSATGQNYLQKLDETEKELYRVGQESALQFIQWRDRSAQRIKTV 177          
BLAST of Gcaud2643.t1 vs. uniprot
Match: UPI0006B0BCCB (DNA replication complex GINS protein PSF3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0BCCB)

HSP 1 Score: 78.6 bits (192), Expect = 2.710e-14
Identity = 60/207 (28.99%), Postives = 96/207 (46.38%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSSYFALGVQLAKL-IVDVA-LPGVLVRAFAARCWGIADSAAFSGDKGALAMK-GLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGKRPRE 204
            ME+YFS+DDILA + RI   F    Y LG L+P   S                    D+  G ++ LP WLAQ+L +R+ V +ELP+ Y +  R+ L AD   VDL      ++ +G+ L      D   +  +L + F  R   + D++  +  +   +    LD LE ELF       +  + W+ R+ ++I     V+  + R+
Sbjct:   18 MEEYFSMDDILATEVRIPCRFQLPVYKLGSLNPSSQSP-------------------DLLPGTKLELPLWLAQALQSRHIVNVELPKSYRETYREILSADATMVDLHDLGPYFYHIGLYLLNFPYADTEEISKMLTQTFKNRFRKVMDASQHTLQEETSSWTFRLDMLEVELFNIGQKAFLEFQEWQARKMEKICTSGMVINHKKRK 205          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A0C3QVW0_9AGAM (DNA replication complex GINS protein PSF3 n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QVW0_9AGAM)

HSP 1 Score: 77.0 bits (188), Expect = 6.970e-14
Identity = 59/202 (29.21%), Postives = 95/202 (47.03%), Query Frame = 0
Query:    3 DYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSV---DLAAKCSSYFALGVQLAKLIVDVA---LPGVLVRAFAARCWGIADSAAF-------------SGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKE 185
            DY+SID ILA +H+I   F  +   LG++D  G +E                  KD+  G ++ LP+WLA +L  +++V +E+P+ +  +VR+AL AD RSV   +L     +++  G  +A L+ +     +   L+ AF  R   + D A+              +G+ G    +GLD  E ELF  A       + W E
Sbjct:    4 DYYSIDSILAENHKIPCKFEIDVQGLGYID--GGNE------------------KDIKAGTKMLLPYWLAPTLSLQDWVDVEIPQPFSAKVRRALAADARSVKLSNLVGGTGTWYGFGKMMADLLREPQSSEISTTLINAFKLRLIDLMDQASHFGGAASSIGSSGETGEGGGEFREGLDATERELFTLAQGSVQRTKEWYE 185          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A369JLQ1_HYPMA (DNA replication complex GINS protein PSF3 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JLQ1_HYPMA)

HSP 1 Score: 75.9 bits (185), Expect = 1.820e-13
Identity = 61/207 (29.47%), Postives = 92/207 (44.44%), Query Frame = 0
Query:    2 EDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSVDLAAKCSS---YFALGVQLAKLIVDVA---LPGVLVRAFAARCWGIADSAAF------------SGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDR 190
            +DYFSID I AG+ +I   F  +  NLG L   G SE                  +D+    ++ +P WLA  L+  ++    +P  +G +VR AL+A+ RSV LA    +   ++  G  +  ++ +     + GVL+  F AR   + D A              +GD      +GLD  E ELF  A   A   ++W E  SDR
Sbjct:    3 QDYFSIDSIFAGNQKIQCVFKQDLPNLGHLG--GGSE------------------RDIAALSKIQIPLWLAYVLIYSDWADFNIPTAFGPRVRNALKAEARSVRLAGLVGAGGLWYGFGKTITDILAEEQANEISGVLITTFRARLVEVIDQAQHFAALGPVGAGGSNGDTAQAFREGLDTTERELFALAQESAKRTKKWYEE-SDR 188          
BLAST of Gcaud2643.t1 vs. uniprot
Match: A0A1Y2B726_9TREE (DNA replication complex GINS protein PSF3 n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2B726_9TREE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-12
Identity = 53/154 (34.42%), Postives = 77/154 (50.00%), Query Frame = 0
Query:    2 EDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELEDNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRADTRSV---DLAAKCSSYFALGVQLAKLIVDVA---LPGVLVRAFAARCWGIADSAA 149
            +DYFS+  ILA +H++  TFL +   LG+L+  G S                  D D+ +  +V +PFWLAQ+L    F    LP  Y  +VR AL A   SV   +L  +   ++  G +LA ++ DV    L G+L+RAF  R   + D AA
Sbjct:   19 DDYFSLQAILADNHKLSCTFLLDVPGLGYLE--GGS------------------DNDLKENTKVEIPFWLAQTLSLNEFTTFPLPPPYAPRVRSALNASPSSVKLSNLVGQGGWWYRWGRRLADVLDDVPQSELLGMLLRAFVGRLPNLQDLAA 152          
The following BLAST results are available for this feature:
BLAST of Gcaud2643.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JA98_9FLOR1.880e-10165.61DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
R7Q771_CHOCR1.610e-6552.07DNA replication complex GINS protein psf3 n=1 Tax=... [more]
A0A0L0DJQ1_THETB8.950e-2135.12DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A1X6NKH3_PORUM1.870e-1930.88Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A0E9NME2_SAICN7.930e-1932.09DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
S2JRR5_MUCC11.920e-1629.44DNA replication complex GINS protein PSF3 n=4 Tax=... [more]
UPI0006B0BCCB2.710e-1428.99DNA replication complex GINS protein PSF3-like n=1... [more]
A0A0C3QVW0_9AGAM6.970e-1429.21DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A369JLQ1_HYPMA1.820e-1329.47DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A1Y2B726_9TREE1.280e-1234.42DNA replication complex GINS protein PSF3 n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038437GINS complex, subunit Psf3 superfamilyGENE3D1.20.58.2050coord: 1..185
e-value: 8.2E-42
score: 144.8
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 66..125
e-value: 3.8E-6
score: 27.3
IPR010492GINS complex, subunit Psf3PANTHERPTHR22768UNCHARACTERIZEDcoord: 1..203
NoneNo IPR availableCDDcd11713GINS_A_psf3coord: 80..186
e-value: 4.37888E-21
score: 82.3139
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 1..86
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 85..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_145_length_43658_cov_4.983588contigNODE_145_length_43658_cov_4.983588:16417..17076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2643.t1Gcaud2643.t1Gracilaria caudata M_176_S67 malemRNANODE_145_length_43658_cov_4.983588 16417..17076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELE
DNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRAD
TRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSAAF
SGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGK
RPREELGSPVTPSTRPRTS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038437GINS_Psf3_sf
IPR021151GINS_A
IPR010492GINS_Psf3
IPR036224GINS_bundle-like_dom_sf