Gcaud2623.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2623.t1
Unique Name	Gcaud2623.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	297

Homology

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BLAST of Gcaud2623.t1 vs. uniprot
Match: A0A2V3J2X3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X3_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 2.320e-85
Identity = 152/218 (69.72%), Postives = 173/218 (79.36%), Query Frame = 0

Query:   79 DEDPAVAKVRKEYEEKVSQLTQDVTNMKLEMASLRRNHLQNIKQITQSRDMFAMQLAKEQDGPNKTSTAKTKKLEDMEVQLRAARTRNNDLENENTVLREEVKQLNFRVQASKTLDAASDGYEKIVSELVEAKVKCAQLEEEKEELLRMNKELSSTSHLLREANGELEKSRSHWVVQXXXXXXXXXXXXXXXXXXXXTATTATEAPSDTGSLQDVKLN 296
            DEDPAV KVR E E++V QL Q+++NMKLEM SLRRNH+QNIKQ+T+SRDMFA QLAKEQD   K S+A  KKLED+E QLRAARTRN+DLE+EN +LR++VKQLNFRVQASKT DAASDGYE+IVSELV  KV+CAQLEEEKEELLRMNKE +ST+H+LREANGELEKSRS WVVQ                     AT A EA +D GSLQDVKLN
Sbjct:   76 DEDPAVTKVRTESEQQVEQLRQELSNMKLEMGSLRRNHIQNIKQLTESRDMFAKQLAKEQDSTVKPSSANAKKLEDLEAQLRAARTRNSDLESENEMLRDDVKQLNFRVQASKTFDAASDGYEQIVSELVMVKVRCAQLEEEKEELLRMNKEFASTAHVLREANGELEKSRSQWVVQCADIEKQRTELETKLKELESKATNAVEAQTD-GSLQDVKLN 292

The following BLAST results are available for this feature:

BLAST of Gcaud2623.t1 vs. uniprot

BLAST of Gcaud2623.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J2X3_9FLOR	2.320e-85	69.72	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 256..283
None	No IPR available	COILS	Coil	Coil	coord: 200..237
None	No IPR available	COILS	Coil	Coil	coord: 88..115
None	No IPR available	COILS	Coil	Coil	coord: 152..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..34

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_205_length_37462_cov_4.544219	contig	NODE_205_length_37462_cov_4.544219:7795..8685 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2623.t1	Gcaud2623.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_205_length_37462_cov_4.544219 7795..8685 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
MPDVAPTGSADADAANGTESLPQTQPSDAGAEPSTSEMSEIDRIKAAHAA
RRSRRSRGASAVNVPSPLDSKSQQTPPTDEDPAVAKVRKEYEEKVSQLTQ
DVTNMKLEMASLRRNHLQNIKQITQSRDMFAMQLAKEQDGPNKTSTAKTK
KLEDMEVQLRAARTRNNDLENENTVLREEVKQLNFRVQASKTLDAASDGY
EKIVSELVEAKVKCAQLEEEKEELLRMNKELSSTSHLLREANGELEKSRS
HWVVQCAEIEKQRTELESKLKEYETTATTATEAPSDTGSLQDVKLN*