Gcaud2623.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2623.t1
Unique NameGcaud2623.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:7795..8685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2623Gcaud2623Gracilaria caudata M_176_S67 malegeneNODE_205_length_37462_cov_4.544219 7795..8685 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2623.t1.stop1Gcaud2623.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_205_length_37462_cov_4.544219 7795..7797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2623.t1.CDS1Gcaud2623.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 7795..8685 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2623.t1.exon1Gcaud2623.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 7795..8685 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2623.t1.start1Gcaud2623.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_205_length_37462_cov_4.544219 8683..8685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2623.t1Gcaud2623.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_205_length_37462_cov_4.544219 7795..8685 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp
MPDVAPTGSADADAANGTESLPQTQPSDAGAEPSTSEMSEIDRIKAAHAA
RRSRRSRGASAVNVPSPLDSKSQQTPPTDEDPAVAKVRKEYEEKVSQLTQ
DVTNMKLEMASLRRNHLQNIKQITQSRDMFAMQLAKEQDGPNKTSTAKTK
KLEDMEVQLRAARTRNNDLENENTVLREEVKQLNFRVQASKTLDAASDGY
EKIVSELVEAKVKCAQLEEEKEELLRMNKELSSTSHLLREANGELEKSRS
HWVVQCAEIEKQRTELESKLKEYETTATTATEAPSDTGSLQDVKLN*
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spliced messenger RNA

>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:7795..8685- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGACGTTGCGCCGACCGGCTCTGCGGACGCTGACGCAGCGAATGG
TACCGAATCGCTTCCCCAGACGCAACCCTCTGACGCCGGTGCTGAGCCCA
GCACATCTGAAATGTCGGAAATCGACAGAATCAAGGCTGCCCATGCCGCT
CGTCGCTCTCGTCGCTCGCGCGGCGCTTCAGCCGTAAACGTCCCCTCCCC
ACTGGATTCAAAGTCGCAACAAACCCCCCCCACAGACGAAGACCCAGCAG
TGGCAAAAGTTAGAAAAGAGTATGAAGAAAAAGTATCTCAGCTCACTCAA
GATGTAACCAACATGAAGCTGGAAATGGCCTCACTGCGAAGGAATCATCT
GCAAAACATCAAGCAGATTACTCAATCGCGCGATATGTTTGCCATGCAGC
TTGCAAAGGAGCAAGACGGCCCGAATAAGACTTCCACTGCGAAGACCAAG
AAACTGGAAGACATGGAAGTGCAGCTGCGAGCAGCCAGAACTAGGAACAA
CGATCTGGAGAACGAAAACACCGTGTTGCGCGAGGAAGTGAAGCAACTCA
ACTTTAGAGTGCAAGCCAGTAAGACTCTGGACGCCGCGTCGGATGGCTAT
GAGAAAATCGTGTCAGAACTGGTGGAAGCAAAGGTGAAGTGTGCTCAGCT
CGAGGAGGAAAAGGAAGAGCTTCTACGTATGAACAAGGAGCTTTCATCCA
CATCACATTTACTGCGCGAAGCGAATGGGGAGCTCGAAAAGAGTAGATCT
CACTGGGTCGTTCAATGCGCCGAAATCGAAAAGCAAAGGACCGAATTGGA
ATCAAAGCTGAAGGAATATGAAACTACCGCCACTACTGCCACCGAGGCTC
CATCGGACACTGGCTCGTTGCAGGACGTGAAGCTTAACTAA
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protein sequence of Gcaud2623.t1

>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
MPDVAPTGSADADAANGTESLPQTQPSDAGAEPSTSEMSEIDRIKAAHAA
RRSRRSRGASAVNVPSPLDSKSQQTPPTDEDPAVAKVRKEYEEKVSQLTQ
DVTNMKLEMASLRRNHLQNIKQITQSRDMFAMQLAKEQDGPNKTSTAKTK
KLEDMEVQLRAARTRNNDLENENTVLREEVKQLNFRVQASKTLDAASDGY
EKIVSELVEAKVKCAQLEEEKEELLRMNKELSSTSHLLREANGELEKSRS
HWVVQCAEIEKQRTELESKLKEYETTATTATEAPSDTGSLQDVKLN*
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mRNA from alignment at NODE_205_length_37462_cov_4.544219:7795..8685-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:7795..8685- (Gracilaria caudata M_176_S67 male)
ATGCCGGACGTTGCGCCGACCGGCTCTGCGGACGCTGACGCAGCGAATGG
TACCGAATCGCTTCCCCAGACGCAACCCTCTGACGCCGGTGCTGAGCCCA
GCACATCTGAAATGTCGGAAATCGACAGAATCAAGGCTGCCCATGCCGCT
CGTCGCTCTCGTCGCTCGCGCGGCGCTTCAGCCGTAAACGTCCCCTCCCC
ACTGGATTCAAAGTCGCAACAAACCCCCCCCACAGACGAAGACCCAGCAG
TGGCAAAAGTTAGAAAAGAGTATGAAGAAAAAGTATCTCAGCTCACTCAA
GATGTAACCAACATGAAGCTGGAAATGGCCTCACTGCGAAGGAATCATCT
GCAAAACATCAAGCAGATTACTCAATCGCGCGATATGTTTGCCATGCAGC
TTGCAAAGGAGCAAGACGGCCCGAATAAGACTTCCACTGCGAAGACCAAG
AAACTGGAAGACATGGAAGTGCAGCTGCGAGCAGCCAGAACTAGGAACAA
CGATCTGGAGAACGAAAACACCGTGTTGCGCGAGGAAGTGAAGCAACTCA
ACTTTAGAGTGCAAGCCAGTAAGACTCTGGACGCCGCGTCGGATGGCTAT
GAGAAAATCGTGTCAGAACTGGTGGAAGCAAAGGTGAAGTGTGCTCAGCT
CGAGGAGGAAAAGGAAGAGCTTCTACGTATGAACAAGGAGCTTTCATCCA
CATCACATTTACTGCGCGAAGCGAATGGGGAGCTCGAAAAGAGTAGATCT
CACTGGGTCGTTCAATGCGCCGAAATCGAAAAGCAAAGGACCGAATTGGA
ATCAAAGCTGAAGGAATATGAAACTACCGCCACTACTGCCACCGAGGCTC
CATCGGACACTGGCTCGTTGCAGGACGTGAAGCTTAACTAA
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Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:7795..8685-

>Gcaud2623.t1 ID=Gcaud2623.t1|Name=Gcaud2623.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=891bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:7795..8685- (Gracilaria caudata M_176_S67 male)
ATGCCGGACGTTGCGCCGACCGGCTCTGCGGACGCTGACGCAGCGAATGG
TACCGAATCGCTTCCCCAGACGCAACCCTCTGACGCCGGTGCTGAGCCCA
GCACATCTGAAATGTCGGAAATCGACAGAATCAAGGCTGCCCATGCCGCT
CGTCGCTCTCGTCGCTCGCGCGGCGCTTCAGCCGTAAACGTCCCCTCCCC
ACTGGATTCAAAGTCGCAACAAACCCCCCCCACAGACGAAGACCCAGCAG
TGGCAAAAGTTAGAAAAGAGTATGAAGAAAAAGTATCTCAGCTCACTCAA
GATGTAACCAACATGAAGCTGGAAATGGCCTCACTGCGAAGGAATCATCT
GCAAAACATCAAGCAGATTACTCAATCGCGCGATATGTTTGCCATGCAGC
TTGCAAAGGAGCAAGACGGCCCGAATAAGACTTCCACTGCGAAGACCAAG
AAACTGGAAGACATGGAAGTGCAGCTGCGAGCAGCCAGAACTAGGAACAA
CGATCTGGAGAACGAAAACACCGTGTTGCGCGAGGAAGTGAAGCAACTCA
ACTTTAGAGTGCAAGCCAGTAAGACTCTGGACGCCGCGTCGGATGGCTAT
GAGAAAATCGTGTCAGAACTGGTGGAAGCAAAGGTGAAGTGTGCTCAGCT
CGAGGAGGAAAAGGAAGAGCTTCTACGTATGAACAAGGAGCTTTCATCCA
CATCACATTTACTGCGCGAAGCGAATGGGGAGCTCGAAAAGAGTAGATCT
CACTGGGTCGTTCAATGCGCCGAAATCGAAAAGCAAAGGACCGAATTGGA
ATCAAAGCTGAAGGAATATGAAACTACCGCCACTACTGCCACCGAGGCTC
CATCGGACACTGGCTCGTTGCAGGACGTGAAGCTTAACTAA
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