Gcaud2620.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2620.t1
Unique NameGcaud2620.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Homology
BLAST of Gcaud2620.t1 vs. uniprot
Match: A0A2V3J2Z9_9FLOR (G-patch domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Z9_9FLOR)

HSP 1 Score: 163 bits (412), Expect = 2.840e-43
Identity = 81/183 (44.26%), Postives = 117/183 (63.93%), Query Frame = 0
Query:    1 MEREVKELGLQGSEFLFCTFQSREEWPYMQTWKDMFCQLGISPRQGGIVPLQNAKIISASVAAAVLGA---RVESSSLAAERNGDDYYDEFKS-----MVDHLQRMKRSPSPRRRRVLFLSEGDNMWYGGSLQFEQANRALVRCYGSSRLVWLDNHAIIGLSRANFRKLKGIEFGGLLEPEDV 175
            ++RE++EL + G EF+   ++S + WPY++TWKDMFCQLG+SPRQGGI+  Q++K +S  VAA VLGA   +  +  L   +  D    E  S     ++ +L+  K   + RRRRVLF S   +MW+ G+++FE     L+R  GS R  W +  A++GL RA++RKLK I F GLLEPED+
Sbjct:  759 LKRELRELSIHGDEFICSLYKSNDTWPYLETWKDMFCQLGVSPRQGGIIVSQDSKTVSGEVAANVLGAYAVKCTALPLQGSKPSDKTVSENMSKAADRVIQYLRTSKPGYATRRRRVLFFSRQTSMWHAGAVEFENEKMVLIRYCGSERTEWAEKDALLGLCRADYRKLKNINFEGLLEPEDI 941          
BLAST of Gcaud2620.t1 vs. uniprot
Match: R7QAR8_CHOCR (G-patch domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAR8_CHOCR)

HSP 1 Score: 76.6 bits (187), Expect = 4.550e-13
Identity = 57/208 (27.40%), Postives = 101/208 (48.56%), Query Frame = 0
Query:    1 MEREVKELGLQGSEFLF---CTFQSREEWPYMQTWKDMFCQLGISPRQGGI-VPLQ---NAKIISASVAAAVLGARVESSSLAAERNGDDYYDEFK----------SMVDHLQRM------KRSPSPRRRRVLFLSEGDNMWYGGSLQF-------EQANRALVRCYGSSRLVWLDNHAIIGLSRANFRKLKGIEFGGLLEPEDVECL 178
            M RE+  LG    +FL     T ++ +EWPY+ TW+D+ C++G+  +Q  + V +Q   +   +   VA++VLGAR   S L +E +     + F+           +  + +R+      K      +R VL L   D +WY G  +F       +    +L+  +G  +  W+ N  ++ LS+ ++ K++   F G+L+P DVE L
Sbjct:  705 MNREMTSLGT-AHQFLNRSRVTVKNEDEWPYIMTWQDLLCRIGVRAQQAVLLVRVQQWTSQTCLGGVVASSVLGAR---SLLLSEADSSVSMELFECNPRCEIISAEVGRNHERLFAQICEKEGGMFTKRNVLALYSSDGLWYAGREEFGGTHGVGKACESSLIAFFGYGKREWVQNDCVLELSKEHYHKMRDARFAGILDPADVEDL 908          
The following BLAST results are available for this feature:
BLAST of Gcaud2620.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2Z9_9FLOR2.840e-4344.26G-patch domain-containing protein n=1 Tax=Gracilar... [more]
R7QAR8_CHOCR4.550e-1327.40G-patch domain-containing protein n=1 Tax=Chondrus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:1345..1881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2620.t1Gcaud2620.t1Gracilaria caudata M_176_S67 malemRNANODE_205_length_37462_cov_4.544219 1345..1881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2620.t1 ID=Gcaud2620.t1|Name=Gcaud2620.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MEREVKELGLQGSEFLFCTFQSREEWPYMQTWKDMFCQLGISPRQGGIVP
LQNAKIISASVAAAVLGARVESSSLAAERNGDDYYDEFKSMVDHLQRMKR
SPSPRRRRVLFLSEGDNMWYGGSLQFEQANRALVRCYGSSRLVWLDNHAI
IGLSRANFRKLKGIEFGGLLEPEDVECL*
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