Gcaud2586.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2586.t1
Unique NameGcaud2586.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length268
Homology
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BLAST of Gcaud2586.t1 vs. uniprot
Match: A0A2V3IZE7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZE7_9FLOR)

HSP 1 Score: 252 bits (644), Expect = 3.680e-80
Identity = 145/272 (53.31%), Postives = 182/272 (66.91%), Query Frame = 0 
Query:    1 MPSLKPLLDALACISAPSRAEDVFLSHSAGGLRFSTAAPAHTASVILPPSAFTRLHVTQSQLNIRLNLSALRDALGVLGAAA-AHVELWFVDTTLVARSELHGSV-----VQVSLAALHFL-QPPALIEPGDAPELGAFILGADAFRDALNDLDYAGAPLVQLLFLENPPCLRLVSPAGSSEHQARLTIELSESAAGFQALRCDEEQSVVLAGDLLLRPARALAAAESVKLALNQEHVLSVVCRLRGVGAEERSFVEFAMLTQQCDEGEEDE 265
            M S+KPL+DALAC++ PSRA DV +S    GLRFSTA P H AS ILPPSAFT L V  + L IRLNLSAL+D L VL AA  + V+L F +    AR  +H +      +   LAALH   Q   LIEP DA ++ AFI+GADAFRDAL +LDYA A  VQL FL   P +R V+PA  ++ QAR+ +EL   ++GFQA+RCD EQ+     + +LR  RAL  AESVKL LN+  VLS++CRL+G   E+RSFVEF ML QQ +  +ED+
Sbjct:   19 MTSIKPLVDALACLTQPSRAHDVIVSQGTAGLRFSTATPTHQASAILPPSAFTTLRVNPADLRIRLNLSALQDCLAVLSAATPSDVQLSFSN----ARVRVHCTAADECSIHAELAALHAAEQSSELIEPADANDVAAFIIGADAFRDALTELDYASAQTVQLSFLPEQPSVRFVAPASCADGQARVMVELVAQSSGFQAVRCDGEQNATFRTEHVLRATRALGVAESVKLVLNEAGVLSILCRLKGSAVEDRSFVEFVMLAQQIEGDDEDD 286
The following BLAST results are available for this feature:
BLAST of Gcaud2586.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZE7_9FLOR3.680e-8053.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 1..257
e-value: 5.1E-18
score: 67.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:7075..7878 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2586.t1Gcaud2586.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 7075..7878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2586.t1 ID=Gcaud2586.t1|Name=Gcaud2586.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MPSLKPLLDALACISAPSRAEDVFLSHSAGGLRFSTAAPAHTASVILPPS
AFTRLHVTQSQLNIRLNLSALRDALGVLGAAAAHVELWFVDTTLVARSEL
HGSVVQVSLAALHFLQPPALIEPGDAPELGAFILGADAFRDALNDLDYAG
APLVQLLFLENPPCLRLVSPAGSSEHQARLTIELSESAAGFQALRCDEEQ
SVVLAGDLLLRPARALAAAESVKLALNQEHVLSVVCRLRGVGAEERSFVE
FAMLTQQCDEGEEDEAL*
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