Gcaud2585.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2585.t1
Unique NameGcaud2585.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length205
Homology
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BLAST of Gcaud2585.t1 vs. uniprot
Match: A0A2V3IWM3_9FLOR (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWM3_9FLOR)

HSP 1 Score: 224 bits (572), Expect = 2.330e-71
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 0 
Query:    1 MQSCRPCAAEWPPFFPPSHTQRLHVASSISNDPPAPLLRAAFKPPTGPSQPPLGLAAALHDEHTPEL-VPTAYRQPL--PSCISLAVAHGIRGGVIGSVFGGAMALTTAVSSRYPRDVVLSQTANGAMRNAAGFASWTSVFALTRCTLVRTRRRDDLLNPLMAGAFTGAVLTLISVRGHWRYYQSQILTNAGASAMIAVVFDSFNR 203
            MQ CR C+   P F     ++ +HV  S   DPP+ LL+AAF P    +Q P GLA+ALH+  T    +P AY      PSC+SLA+AHGIRG VIGSVFGGAMAL+TAVS RYPR+ VLSQTA+GA+R+A GFASWTS++ALT CTL RTRRRDDLLNP +AGAF G  LT  S+RGHWR++++QI TNAGASA+ A+VFD+ NR
Sbjct:   23 MQPCRECSDALPHF-----SRFVHVQHS---DPPS-LLQAAFTPS---AQSPPGLASALHERSTASTTLPLAYGYGYAPPSCLSLALAHGIRGAVIGSVFGGAMALSTAVSGRYPREAVLSQTAHGAVRSATGFASWTSLYALTNCTLRRTRRRDDLLNPAIAGAFAGGALTCFSLRGHWRFHRTQIATNAGASAVFAIVFDAMNR 216
The following BLAST results are available for this feature:
BLAST of Gcaud2585.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IWM3_9FLOR2.330e-7160.68Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 79..184
e-value: 7.0E-13
score: 49.0
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..173
NoneNo IPR availableTMHMMTMhelixcoord: 154..173
IPR039175Mitochondrial import inner membrane translocase subunit TIM22PANTHERPTHR14110MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22coord: 78..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:6139..6753 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2585.t1Gcaud2585.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 6139..6753 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2585.t1 ID=Gcaud2585.t1|Name=Gcaud2585.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=205bp
MQSCRPCAAEWPPFFPPSHTQRLHVASSISNDPPAPLLRAAFKPPTGPSQ
PPLGLAAALHDEHTPELVPTAYRQPLPSCISLAVAHGIRGGVIGSVFGGA
MALTTAVSSRYPRDVVLSQTANGAMRNAAGFASWTSVFALTRCTLVRTRR
RDDLLNPLMAGAFTGAVLTLISVRGHWRYYQSQILTNAGASAMIAVVFDS
FNRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039175TIM22