Gcaud2564.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2564.t1
Unique NameGcaud2564.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length214
Homology
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BLAST of Gcaud2564.t1 vs. uniprot
Match: A0A2V3J0L7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0L7_9FLOR)

HSP 1 Score: 225 bits (574), Expect = 1.910e-71
Identity = 131/205 (63.90%), Postives = 149/205 (72.68%), Query Frame = 0 
Query:    1 MTEMTINNRRVRSWVYGAITLCSLVVFGNIAEICDTFNSCPVRLRGIITIGVLGTVFSIVMCLALLCDIEPIIKLEIVFAVILFILYSICVGIVSSVRTGLGNT---------IXXXXXXXXXXXXXXXVTFAWIAEVLVCIALFMVLTSSDGPFPLGNGSKAPAEKMEEMERGLADVETPEEEYMHKVGT-PKTDSGLDSEQSP 195
            M   T NNRRVRS +YG ITLCSLVVFGNIAE+CD  N CPVRLRGIITIGVLGTVFS+ MC+ALLCDIE I  LE+VFAVILFILYSICVGIVSSVRTG+G +         +               VTF+WIAEVLVCIALFM LT S G FPL + SK+P    +++ERGLADVETPE EYM K+G+ P  +S   SE+SP
Sbjct:    1 MASATFNNRRVRSLIYGLITLCSLVVFGNIAEVCDKNNVCPVRLRGIITIGVLGTVFSLTMCIALLCDIELIAVLELVFAVILFILYSICVGIVSSVRTGIGASNIITTGSLGLGGVTLVGGGLGNIIAVTFSWIAEVLVCIALFMALTCSGGLFPLKSSSKSP----DDIERGLADVETPEREYMEKLGSRPLAESPDGSEESP 201
The following BLAST results are available for this feature:
BLAST of Gcaud2564.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J0L7_9FLOR1.910e-7163.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 67..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..139
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 13..31
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:20249..20890 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2564.t1Gcaud2564.t1Gracilaria caudata M_176_S67 malemRNANODE_296_length_31928_cov_4.500110 20249..20890 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2564.t1 ID=Gcaud2564.t1|Name=Gcaud2564.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MTEMTINNRRVRSWVYGAITLCSLVVFGNIAEICDTFNSCPVRLRGIITI
GVLGTVFSIVMCLALLCDIEPIIKLEIVFAVILFILYSICVGIVSSVRTG
LGNTIGIVSAVSTGLGNTIAVTFAWIAEVLVCIALFMVLTSSDGPFPLGN
GSKAPAEKMEEMERGLADVETPEEEYMHKVGTPKTDSGLDSEQSPNGMVE
DSKDMNDKNPGDA*
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