Gcaud2512.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2512.t1
Unique NameGcaud2512.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length297
Homology
BLAST of Gcaud2512.t1 vs. uniprot
Match: A0A2V3INJ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ9_9FLOR)

HSP 1 Score: 335 bits (858), Expect = 1.330e-111
Identity = 167/285 (58.60%), Postives = 201/285 (70.53%), Query Frame = 0
Query:    1 LEIFLVFGVRPYSALRPVPCIAIDTSLRFRSERHPAQAESAAVDCRTLNHGRFAEHNATYSASTGKIRCGTQILFDFRLNSTDLFTTPLMVQRPSADVNDIEVSCASKPVPADDNKCLLILRANNTVYISDLLYTSSSTRNVDVSVLNLPFCATQLAYQAPLEQILYLGTRAANTLVEGVREPILFRHRVFSGFRNRTCLERDIDPRHTQVHPAMLAGLILVWVICFLTYVVLYCAKPLAPFFFDMRDPMHWAKRTFRASSTTLKKNVGVKLVRVD-GTDRVLVC 284
            LEI LVF V PYSA R VPC+++DTSLRF    H  QAESAA  CRTLN GRF EHNAT+S STG+  CG + LF F LNST LFT  + +QR + D  +  V+CAS+PV   DNKCLL+LRA N ++ISDLLYT      V   +  LPF AT+L Y+   EQ  +LG RAAN L+EGVR+P+LFRHRVFSGF N TC ERD+DP HTQ+HPAM   L+L+W  CFLTY VL C KPL   FFDMRDPMHWA+RT+R S   L+++  ++ V  + G  RVLVC
Sbjct:   38 LEILLVFSVHPYSAFRSVPCVSVDTSLRFSVGNHSPQAESAATGCRTLNRGRFTEHNATFSMSTGRTACGKKPLFRFYLNSTTLFTNLIDLQRSAIDTENHTVACASRPVSTRDNKCLLVLRAENDLFISDLLYTFPPAAQV-FDIEQLPFSATRLPYKPSQEQAEFLGARAANVLLEGVRKPVLFRHRVFSGFSNETCRERDVDPLHTQIHPAMFTALVLIWCACFLTYTVLRCVKPLGTPFFDMRDPMHWAERTYRPSRVILERDAVIQAVVFENGKRRVLVC 321          
BLAST of Gcaud2512.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 62.8 bits (151), Expect = 1.610e-7
Identity = 70/297 (23.57%), Postives = 113/297 (38.05%), Query Frame = 0
Query:    1 LEIFLVFGVRPYSAL--RPVPCIAIDTSLRFRSERHPAQAESAAV-DCRTLNHGRFAEHNATYSASTGKIRCGTQILFDFRLNSTDLFTTPLMVQRPSADVNDIEVSCASKPVP-----ADDNKCLLILRAN-------NTVYISDLLYTSSSTR----NVDVSVLNLPFCATQLAYQAPLEQILYLGTRAANTLVEGVREPILFRHRVFSGFRNRTC-LERDIDPRHTQVHPAMLAGLILVWVICFLTYVVLYCAKPLAPFFFDMRDPMHWAKRTFRASSTTLKKNVGVKLVRVDG 277
            +E+ L F   P   L  +  PC+A++T  R   +   +  E   V  C   N          YS  T K+ C          ++T +FT    V  P   +       +  P P       D  C++I  A+        TV+ SD+ +    +     N  +  LN     T  + Q   E +     R      E + +P   R  +F G    TC  +R  +   T+V P ++  +  VWVI    Y +          F+D+ +P+HWAKRT+R +   +  +  V  V  +G
Sbjct:   71 IELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAE--------SATLMFTLEPHVSLP---IGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLN----TTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTSEA--TEVPPFIIVSVSTVWVISLAAYAMTLLLSRRV--FYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENG 348          
The following BLAST results are available for this feature:
BLAST of Gcaud2512.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INJ9_9FLOR1.330e-11158.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A0_9FLOR1.610e-723.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..236
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 237..296
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..213
NoneNo IPR availableTMHMMTMhelixcoord: 214..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:21457..22347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2512.t1Gcaud2512.t1Gracilaria caudata M_176_S67 malemRNANODE_441_length_25217_cov_4.561570 21457..22347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2512.t1 ID=Gcaud2512.t1|Name=Gcaud2512.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
LEIFLVFGVRPYSALRPVPCIAIDTSLRFRSERHPAQAESAAVDCRTLNH
GRFAEHNATYSASTGKIRCGTQILFDFRLNSTDLFTTPLMVQRPSADVND
IEVSCASKPVPADDNKCLLILRANNTVYISDLLYTSSSTRNVDVSVLNLP
FCATQLAYQAPLEQILYLGTRAANTLVEGVREPILFRHRVFSGFRNRTCL
ERDIDPRHTQVHPAMLAGLILVWVICFLTYVVLYCAKPLAPFFFDMRDPM
HWAKRTFRASSTTLKKNVGVKLVRVDGTDRVLVCDADEITDCTESI*
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