Gcaud2511.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2511.t1
Unique NameGcaud2511.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length742
Homology
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A2V3IIQ0_9FLOR (Nucleolar and coiled-body phosphoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIQ0_9FLOR)

HSP 1 Score: 167 bits (422), Expect = 7.410e-40
Identity = 116/226 (51.33%), Postives = 142/226 (62.83%), Query Frame = 0
Query:  543 YEKRATRRKSGVVQDLSRKLENISP----AASGKSKR--------KPHGIAKTRKQENSSL--ASKXXXXXXXXXKPAKSESKAKTLGNPKANLSSARLS-NGN---QNGGTG----NGVPKTEA-----QARKRRRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDDSD 741
            YEKR+TRRKSGVVQDLSRKL+++SP        K  R        K  G+ +  ++ +SS+              KP+ S++K KT    K  ++   LS NG+   Q+ G G    N   K        Q RKR R D   +  REN  PFKRV+VEDVVFKD+RL+DN+FFSKRDT+G+ AHRDL VTKGKGFRKEKTKKKRLNHHGG+LS EVNS+KF DDSD
Sbjct:  448 YEKRSTRRKSGVVQDLSRKLQSLSPRIPNTPQNKETRTSVVERQVKEGGLCRQTEKSSSSVLPTGTDPWMSGSGLKPSHSKTK-KTEERTKTPVALRELSANGDAVIQHIGNGAAHNNRFDKATGNDGSNQKRKRTRKDETSSAIRENPKPFKRVKVEDVVFKDDRLKDNTFFSKRDTFGSRAHRDLVVTKGKGFRKEKTKKKRLNHHGGRLSLEVNSFKFPDDSD 672          
BLAST of Gcaud2511.t1 vs. uniprot
Match: R7QJ02_CHOCR (SRP40_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ02_CHOCR)

HSP 1 Score: 114 bits (285), Expect = 6.340e-23
Identity = 82/188 (43.62%), Postives = 109/188 (57.98%), Query Frame = 0
Query:  547 ATRRKSGVVQDLSRKLENISPA---ASGKSKRKPHGIAKTRKQENSSLASKXXXXXXXXXKPAKSESKAK-TLGNPKANLSSARLSNGNQNGGTGNGVPKTEAQARKRRRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFE 730
            A RR+SGVVQ+L+ KL+N++P+   A  KSKR+     K + Q+ S ++S              + ++ +      K   SSA L         G+          KRRR +   NG R   +PFKRVR E VV+ D RLRDN+F+SK D++G  AH DL VT+GKGFRKEKTKKKRLNHHGG LS++
Sbjct:  325 AARRRSGVVQNLAAKLQNVTPSPKNALNKSKRE-----KRKSQDRSDVSSDDVVKEDKIGGKENTSTEVQFPRSEQKRKASSASLD--------GDAFINN-----KRRRRNENFNG-RFTPSPFKRVREETVVYSDSRLRDNTFYSKNDSFGVRAHNDLIVTRGKGFRKEKTKKKRLNHHGGTLSYQ 493          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A1Y2GBN8_9FUNG (SRP40, C-terminal domain-domain-containing protein (Fragment) n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GBN8_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 7.100e-17
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0
Query:  666 PFKRVRVEDVVFKDERLRDNSFFSK---RDTYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDDSD 741
            PFKRV+ EDVVF DE+L+DN++ SK    D YG  AH D+ VT+GKGFR EKTKKKR ++ GG ++ E +S+KF  DSD
Sbjct:    9 PFKRVKAEDVVFIDEKLKDNTYMSKGGSMDGYGYRAHLDMIVTRGKGFRAEKTKKKRGSYKGGFITNESHSFKFPTDSD 87          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A1Y1XXA5_9FUNG (SRP40_C domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXA5_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 2.850e-16
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 0
Query:  653 SDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTW---AHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDD 739
            SD     +R  +TPF R++ EDVVF DERL DN+F SK  + G++   AH DL VT+GKGF KEK KKKR ++ GGK+  E +S KF+ D
Sbjct:   13 SDETPKSKRTPNTPFCRIKDEDVVFHDERLMDNTFMSKGGSLGSYGHKAHNDLIVTRGKGFTKEKNKKKRGSYRGGKIDLESHSIKFNFD 102          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A507BUM6_9FUNG (SRP40_C domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUM6_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-15
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 0
Query:  665 TPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNS---YKFSDDSD 741
            TPF+RV++++V + DE L+DNSF SK D YG  AH+DL VT+GKGFR EKTKKKR ++ GG +   V+S   +K+SDD +
Sbjct:  177 TPFQRVKIDEVTYFDESLKDNSFHSKTDEYGMRAHQDLIVTRGKGFRAEKTKKKRGSYRGGPIDTSVSSSFKFKYSDDEE 256          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A067N6K2_9AGAM (SRP40_C domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067N6K2_9AGAM)

HSP 1 Score: 85.5 bits (210), Expect = 6.600e-15
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 0
Query:  637 GNGVPKTEAQARKRRRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSK---RDTYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFS 737
            G+ VP      +  R   A     R+++TPF+RV+ +D+VF D RL+DNSF S+      YG  A RDL VT+G GFRKEK KKKR ++HGG+++ + +S KF+
Sbjct:  141 GDSVPTASGTPQPTRAKGANGKAPRKSNTPFQRVKADDIVFHDNRLKDNSFQSRGAGTGDYGERASRDLIVTRGAGFRKEKNKKKRGSYHGGEITMQSHSIKFT 244          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A1Y3N7M8_PIRSE (SRP40_C domain-containing protein (Fragment) n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y3N7M8_PIRSE)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-14
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  668 KRVRVEDVVFKDERLRDNSFFSKRD---TYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDD 739
            KR++ EDVVF DERL+DNSF +K     +YG  AHRDL VT+GKGFR EK KKKR ++ GGK+    +S KF+ D
Sbjct:    1 KRIKDEDVVFLDERLKDNSFMAKGGAVGSYGEKAHRDLIVTRGKGFRNEKNKKKRGSYRGGKIDLASHSIKFNID 75          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A1Y2EWH2_9FUNG (SRP40_C domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EWH2_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 3.560e-14
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0
Query:  664 HTPFKRVRVEDVVFKDERLRDNSFFSKRD---TYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFS 737
            +TPFKR++ EDVVF DERL+DNSF +K     +YG  AHRDL VT+GKGFR EK KKKR ++ GGK+  + +S KF+
Sbjct:  704 NTPFKRIKDEDVVFLDERLKDNSFMAKGGAIGSYGEKAHRDLIVTRGKGFRNEKNKKKRGSYRGGKIDLQSHSIKFN 780          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A1Y1WS28_9FUNG (SRP40_C domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WS28_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 4.020e-14
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0
Query:  661 RENHTPFKRVRVEDVVFKDERLRDNSFFSKRD---TYGTWAHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFS 737
            R  + PFKR++ EDVVF DERL+DNSF +K     +YG  AHRDL VT+GKGFR EK KKKR ++ GGK+  E +S KF+
Sbjct:  841 RTQNVPFKRIKDEDVVFLDERLKDNSFMAKGGAVGSYGEKAHRDLIVTRGKGFRNEKNKKKRGSYRGGKIDLESHSIKFN 920          
BLAST of Gcaud2511.t1 vs. uniprot
Match: A0A137NPQ1_CONC2 (SRP40_C domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NPQ1_CONC2)

HSP 1 Score: 82.4 bits (202), Expect = 7.050e-14
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 0
Query:  657 ENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTW---AHRDLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSD 738
            +NG R+    F R+R EDV F D RL+DN+F SK   YG++   AH DL VTKGKGF KEK KKKR ++ GG++ F+ +S KF D
Sbjct:  158 QNG-RQQKERFCRIREEDVTFHDSRLKDNTFLSKGGAYGSYGMKAHEDLIVTKGKGFTKEKNKKKRGSYRGGQIDFQSHSIKFDD 241          
The following BLAST results are available for this feature:
BLAST of Gcaud2511.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIQ0_9FLOR7.410e-4051.33Nucleolar and coiled-body phosphoprotein 1 n=1 Tax... [more]
R7QJ02_CHOCR6.340e-2343.62SRP40_C domain-containing protein n=1 Tax=Chondrus... [more]
A0A1Y2GBN8_9FUNG7.100e-1758.23SRP40, C-terminal domain-domain-containing protein... [more]
A0A1Y1XXA5_9FUNG2.850e-1652.22SRP40_C domain-containing protein n=1 Tax=Basidiob... [more]
A0A507BUM6_9FUNG1.350e-1555.00SRP40_C domain-containing protein n=1 Tax=Synchytr... [more]
A0A067N6K2_9AGAM6.600e-1545.19SRP40_C domain-containing protein n=1 Tax=Botryoba... [more]
A0A1Y3N7M8_PIRSE1.010e-1457.33SRP40_C domain-containing protein (Fragment) n=2 T... [more]
A0A1Y2EWH2_9FUNG3.560e-1458.44SRP40_C domain-containing protein n=1 Tax=Neocalli... [more]
A0A1Y1WS28_9FUNG4.020e-1457.50SRP40_C domain-containing protein n=1 Tax=Anaeromy... [more]
A0A137NPQ1_CONC27.050e-1452.94SRP40_C domain-containing protein n=1 Tax=Conidiob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 666..736
e-value: 1.3E-20
score: 74.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 415..488
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 596..610
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 614..640
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 644..664
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 539..557
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..538
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..664
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..510
NoneNo IPR availablePANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 21..738

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:18076..20645 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2511.t1Gcaud2511.t1Gracilaria caudata M_176_S67 malemRNANODE_441_length_25217_cov_4.561570 18076..20645 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=742bp
MVGQAATKDRSFPDWRADSLCSLVYNGFRKAGFIHSASAFADDCKHDWSK
GEKILQEAYNTFRSTNGDQKVKDKAQLKKNSKPELKEKVLSKSTDDESES
STSDSETSSRAHGSSDSDESSSASSSDRQKSLKESDSAFCSTVGDQTMKD
KAQLRKDSKLKEKVLSKPNDDESASSTSDSETSSRVQGASGLKRASSSSS
SASSDSDSESSSASSSDRQKSLKKVSDSASSPSESSSSSESMVETPAKPK
TVRTDERHPGAKQTSHLHSQSGAKSESSSDSGSSSSPSSGPSPREESSES
SESSKTSSSSSSSAEESDVIPSARPGLGSSGKRNVKFSSAKSELLPDDES
PMKSSKPKPANPKSEQNESESTGDSDSDSESESESASDSDSSSQETEKPT
GKLVKKAEKSETSGPGKAAAQNGNMRGLRSTEDTSPSSSSSSSSSSSSSP
TSSSEDSHTPAAKNKVTMTDSSDSDDSSTSSSSTESSSEPDSRARKSRAL
ETKKKNEMSKSSSPSETSGDDSTGSDTSSESSDSSDSSSSESYEKRATRR
KSGVVQDLSRKLENISPAASGKSKRKPHGIAKTRKQENSSLASKKNGGSE
EEKKPAKSESKAKTLGNPKANLSSARLSNGNQNGGTGNGVPKTEAQARKR
RRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHR
DLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDDSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718Srp40_C