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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 40492.XP_007300928.1 |
| Preferred name | SRP40 |
| PFAMs | LisH,SRP40_C |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K11294 |
| KEGG Pathway | ko05130,map05130 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006810,GO:0006913,GO:0008150,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046907,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013 |
| Evalue | 2.02e-14 |
| EggNOG OGs | KOG2992@1|root,KOG2992@2759|Eukaryota,38DH8@33154|Opisthokonta,3NUEP@4751|Fungi,3V141@5204|Basidiomycota,229YB@155619|Agaricomycetes,3H5BB@355688|Agaricomycetes incertae sedis |
| Description | SRP40, C-terminal domain |
| COG category | Y |
| BRITE | ko00000,ko00001,ko03009,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2511.t1.start1 | Gcaud2511.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_441_length_25217_cov_4.561570 18076..18078 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2511.t1.stop1 | Gcaud2511.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_441_length_25217_cov_4.561570 20643..20645 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=742bp MVGQAATKDRSFPDWRADSLCSLVYNGFRKAGFIHSASAFADDCKHDWSK GEKILQEAYNTFRSTNGDQKVKDKAQLKKNSKPELKEKVLSKSTDDESES STSDSETSSRAHGSSDSDESSSASSSDRQKSLKESDSAFCSTVGDQTMKD KAQLRKDSKLKEKVLSKPNDDESASSTSDSETSSRVQGASGLKRASSSSS SASSDSDSESSSASSSDRQKSLKKVSDSASSPSESSSSSESMVETPAKPK TVRTDERHPGAKQTSHLHSQSGAKSESSSDSGSSSSPSSGPSPREESSES SESSKTSSSSSSSAEESDVIPSARPGLGSSGKRNVKFSSAKSELLPDDES PMKSSKPKPANPKSEQNESESTGDSDSDSESESESASDSDSSSQETEKPT GKLVKKAEKSETSGPGKAAAQNGNMRGLRSTEDTSPSSSSSSSSSSSSSP TSSSEDSHTPAAKNKVTMTDSSDSDDSSTSSSSTESSSEPDSRARKSRAL ETKKKNEMSKSSSPSETSGDDSTGSDTSSESSDSSDSSSSESYEKRATRR KSGVVQDLSRKLENISPAASGKSKRKPHGIAKTRKQENSSLASKKNGGSE EEKKPAKSESKAKTLGNPKANLSSARLSNGNQNGGTGNGVPKTEAQARKR RRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHR DLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDDSD* back to topspliced messenger RNA >Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2226bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:18076..20645+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGGCCAGGCCGCGACGAAGGACAGGTCGTTTCCCGACTGGCGCGC CGACTCGCTTTGCTCCCTTGTCTACAATGGCTTCCGAAAAGCCGGTTTTA TTCACTCCGCTTCCGCCTTTGCCGATGACTGCAAACATGATTGGAGCAAA GGGGAAAAAATCCTTCAAGAGGCTTACAATACTTTTCGTTCCACTAATGG AGACCAAAAAGTGAAGGACAAAGCTCAGCTGAAGAAGAACTCCAAGCCGG AGCTCAAGGAAAAGGTTTTATCGAAATCAACCGATGATGAATCTGAATCA AGCACTTCCGATTCGGAGACCAGTTCGCGAGCTCACGGTTCTAGCGACTC GGATGAATCATCATCCGCTTCATCTAGCGATCGTCAGAAGAGCTTGAAGG AGTCAGATTCGGCCTTTTGTTCCACTGTTGGAGACCAAACAATGAAGGAC AAAGCTCAGCTGAGAAAGGACTCCAAGCTCAAGGAAAAGGTTTTGTCGAA GCCAAATGATGATGAATCTGCATCTAGCACTTCTGACTCGGAGACTAGTT CGCGAGTCCAAGGCGCTAGTGGCCTGAAGCGAGCTTCTTCATCTTCGTCG TCCGCCTCCTCCGACTCAGATAGCGAATCATCATCCGCTTCATCTAGCGA TCGTCAGAAGAGCCTCAAAAAGGTATCAGATTCAGCATCGTCACCATCTG AGAGCTCCAGTTCTTCGGAGTCGATGGTGGAAACTCCCGCGAAACCGAAG ACTGTGCGCACGGACGAAAGGCATCCGGGCGCAAAACAAACCTCTCATTT ACATTCACAATCTGGTGCCAAATCTGAGTCTTCTTCAGACTCCGGCAGTT CCTCTTCTCCTTCTAGTGGTCCTTCACCTAGGGAAGAATCTAGCGAGTCA TCCGAGAGTTCCAAAACAAGCTCTTCCTCAAGTTCTTCAGCTGAAGAATC TGACGTGATACCGAGCGCTCGTCCTGGTCTGGGATCGAGTGGAAAGCGTA ACGTGAAGTTTTCATCTGCAAAATCCGAGTTGCTTCCCGATGACGAATCA CCCATGAAGAGCAGCAAGCCTAAACCAGCAAATCCCAAATCCGAGCAGAA CGAGTCAGAATCGACAGGTgattcagactcagactcagaatctgaatctg agtcagcatcagactcggactcTTCATCCCAAGAGACTGAAAAGCCTACT GGAAAGCTTGTTAAAAAGGCTGAAAAGTCTGAGACTTCTGGTCCCGGCAA AGCTGCAGCGCAGAACGGAAACATGAGAGGGTTGAGATCGACGGAAGATA CGAGCCCGTCGAGCTCGTCATCTTCTTCATCGTCTTCATCGTCTTCACCA ACGTCTTCTAGTGAAGACTCGCACACGCCTGCTGCAAAGAACAAAGTTAC AATGACGGATAGCTCCGACAGTGATGATTCCTCCACCAGCAGCTCGTCAA CTGAATCTAGCAGCGAACCAGATTCTCGCGCTCGTAAATCCAGAGCTTTA GAGACCAAGAAGAAGAACGAAATGTCAAAGTCTTCATCTCCATCTGAGAC TTCCGGAGACGATAGCACCGGCAGCGACACCTCGAGCGAGAGCAGCGACA GCAGTGACAGCAGCAGTAGCGAAAGCTACGAGAAGCGTGCAACTAGACGC AAGTCAGGTGTGGTTCAAGATCTTTCTCGAAAATTAGAGAACATAAGCCC GGCAGCTTCAGGTAAATCTAAACGGAAACCCCATGGAATCGCGAAGACGA GAAAGCAGGAGAACAGTTCACTTGCTTCAAAGAAGAACGGAGGTTCTGAG GAGGAGAAGAAGCCTGCAAAGTCTGAATCAAAAGCGAAGACATTAGGTAA TCCAAAAGCGAATCTGAGCTCCGCAAGGCTTAGTAATGGCAACCAGAACG GTGGTACAGGTAATGGGGTACCAAAGACGGAAGCTCAAGCAAGAAAACGG CGACGAAGCGACGCATACGAAAACGGGGAACGAGAGAACCACACGCCATT TAAGCGTGTCAGAGTGGAAGACGTTGTCTTCAAAGACGAACGCCTGAGGG ACAACTCATTTTTCTCCAAGAGAGACACATATGGGACCTGGGCGCATCGC GACTTGGCTGTTACAAAGGGAAAAGGGTTTCGAAAGGAAAAGACTAAAAA GAAGCGACTCAATCATCATGGAGGGAAACTCAGTTTTGAAGTTAACTCTT ACAAGTTCTCAGATGATTCGGACTAA back to topprotein sequence of Gcaud2511.t1 >Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=742bp
MVGQAATKDRSFPDWRADSLCSLVYNGFRKAGFIHSASAFADDCKHDWSK GEKILQEAYNTFRSTNGDQKVKDKAQLKKNSKPELKEKVLSKSTDDESES STSDSETSSRAHGSSDSDESSSASSSDRQKSLKESDSAFCSTVGDQTMKD KAQLRKDSKLKEKVLSKPNDDESASSTSDSETSSRVQGASGLKRASSSSS SASSDSDSESSSASSSDRQKSLKKVSDSASSPSESSSSSESMVETPAKPK TVRTDERHPGAKQTSHLHSQSGAKSESSSDSGSSSSPSSGPSPREESSES SESSKTSSSSSSSAEESDVIPSARPGLGSSGKRNVKFSSAKSELLPDDES PMKSSKPKPANPKSEQNESESTGDSDSDSESESESASDSDSSSQETEKPT GKLVKKAEKSETSGPGKAAAQNGNMRGLRSTEDTSPSSSSSSSSSSSSSP TSSSEDSHTPAAKNKVTMTDSSDSDDSSTSSSSTESSSEPDSRARKSRAL ETKKKNEMSKSSSPSETSGDDSTGSDTSSESSDSSDSSSSESYEKRATRR KSGVVQDLSRKLENISPAASGKSKRKPHGIAKTRKQENSSLASKKNGGSE EEKKPAKSESKAKTLGNPKANLSSARLSNGNQNGGTGNGVPKTEAQARKR RRSDAYENGERENHTPFKRVRVEDVVFKDERLRDNSFFSKRDTYGTWAHR DLAVTKGKGFRKEKTKKKRLNHHGGKLSFEVNSYKFSDDSD* back to topmRNA from alignment at NODE_441_length_25217_cov_4.561570:18076..20645+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2570bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:18076..20645+ (Gracilaria caudata M_176_S67 male) ATGGTCGGCCAGGCCGCGACGAAGGACAGGTCGTTTCCCGACTGGCGCGC
CGACTCGCTTTGCTCCCTTGTCTACAATGGCTTCCGAAAAGCCGGTTTTA
TTCACTCCGCTTCCGCCTTTGCCGATGACTGCAAACATGTACGTACTGTT
GACCCATGGCTACCCGGCCTAAGTTTTGTCGCTCTCCTTCTTACGCCCCT
TTCAAACTAACCAAAGGCCTCCAAATGCATTTGTGAAATCTGCGCTAGGA
TTGGAGCAAAGGGGAAAAAATCCTTCAAGAGGCTTACAATACTTTTCGTT
CCACTAATGGAGACCAAAAAGTGAAGGACAAAGCTCAGCTGAAGAAGAAC
TCCAAGCCGGAGCTCAAGGAAAAGGTTTTATCAAAATCAACCGATGATGA
ATCTGAATCAAGCACTTCCGATTCGGAGACCAGCTCCCAAGTTCAAGACT
CTAGCCACACAGATAAATCATCATCTGCCTCATCTAGCGATCTTCAGAAG
GGATTCAGGAAGGAGTCAGATTCGGCTTTTCGTTCCACTATTGAGGACCA
AAAAGTGAAGGACAATGCTCAGCTGAAGAAGAACTCCAAGCCGGAGCTCA
AGGAAAAGGTTTTATCGAAATCAACCGATGATGAATCTGAATCAAGCACT
TCCGATTCGGAGACCAGTTCGCGAGCTCACGGTTCTAGCGACTCGGATGA
ATCATCATCCGCTTCATCTAGCGATCGTCAGAAGAGCTTGAAGGAGTCAG
ATTCGGCCTTTTGTTCCACTGTTGGAGACCAAACAATGAAGGACAAAGCT
CAGCTGAGAAAGGACTCCAAGCTCAAGGAAAAGGTTTTGTCGAAGCCAAA
TGATGATGAATCTGCATCTAGCACTTCTGACTCGGAGACTAGTTCGCGAG
TCCAAGGCGCTAGTGGCCTGAAGCGAGCTTCTTCATCTTCGTCGTCCGCC
TCCTCCGACTCAGATAGCGAATCATCATCCGCTTCATCTAGCGATCGTCA
GAAGAGCCTCAAAAAGGTATCAGATTCAGCATCGTCACCATCTGAGAGCT
CCAGTTCTTCGGAGTCGATGGTGGAAACTCCCGCGAAACCGAAGACTGTG
CGCACGGACGAAAGGCATCCGGGCGCAAAACAAACCTCTCATTTACATTC
ACAATCTGGTGCCAAATCTGAGTCTTCTTCAGACTCCGGCAGTTCCTCTT
CTCCTTCTAGTGGTCCTTCACCTAGGGAAGAATCTAGCGAGTCATCCGAG
AGTTCCAAAACAAGCTCTTCCTCAAGTTCTTCAGCTGAAGAATCTGACGT
GATACCGAGCGCTCGTCCTGGTCTGGGATCGAGTGGAAAGCGTAACGTGA
AGTTTTCATCTGCAAAATCCGAGTTGCTTCCCGATGACGAATCACCCATG
AAGAGCAGCAAGCCTAAACCAGCAAATCCCAAATCCGAGCAGAACGAGTC
AGAATCGACAGGTgattcagactcagactcagaatctgaatctgagtcag
catcagactcggactcTTCATCCCAAGAGACTGAAAAGCCTACTGGAAAG
CTTGTTAAAAAGGCTGAAAAGTCTGAGACTTCTGGTCCCGGCAAAGCTGC
AGCGCAGAACGGAAACATGAGAGGGTTGAGATCGACGGAAGATACGAGCC
CGTCGAGCTCGTCATCTTCTTCATCGTCTTCATCGTCTTCACCAACGTCT
TCTAGTGAAGACTCGCACACGCCTGCTGCAAAGAACAAAGTTACAATGAC
GGATAGCTCCGACAGTGATGATTCCTCCACCAGCAGCTCGTCAACTGAAT
CTAGCAGCGAACCAGATTCTCGCGCTCGTAAATCCAGAGCTTTAGAGACC
AAGAAGAAGAACGAAATGTCAAAGTCTTCATCTCCATCTGAGACTTCCGG
AGACGATAGCACCGGCAGCGACACCTCGAGCGAGAGCAGCGACAGCAGTG
ACAGCAGCAGTAGCGAAAGCTACGAGAAGCGTGCAACTAGACGCAAGTCA
GGTGTGGTTCAAGATCTTTCTCGAAAATTAGAGAACATAAGCCCGGCAGC
TTCAGGTAAATCTAAACGGAAACCCCATGGAATCGCGAAGACGAGAAAGC
AGGAGAACAGTTCACTTGCTTCAAAGAAGAACGGAGGTTCTGAGGAGGAG
AAGAAGCCTGCAAAGTCTGAATCAAAAGCGAAGACATTAGGTAATCCAAA
AGCGAATCTGAGCTCCGCAAGGCTTAGTAATGGCAACCAGAACGGTGGTA
CAGGTAATGGGGTACCAAAGACGGAAGCTCAAGCAAGAAAACGGCGACGA
AGCGACGCATACGAAAACGGGGAACGAGAGAACCACACGCCATTTAAGCG
TGTCAGAGTGGAAGACGTTGTCTTCAAAGACGAACGCCTGAGGGACAACT
CATTTTTCTCCAAGAGAGACACATATGGGACCTGGGCGCATCGCGACTTG
GCTGTTACAAAGGGAAAAGGGTTTCGAAAGGAAAAGACTAAAAAGAAGCG
ACTCAATCATCATGGAGGGAAACTCAGTTTTGAAGTTAACTCTTACAAGT
TCTCAGATGATTCGGACTAA back to topCoding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:18076..20645+ >Gcaud2511.t1 ID=Gcaud2511.t1|Name=Gcaud2511.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2226bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:18076..20645+ (Gracilaria caudata M_176_S67 male) ATGGTCGGCCAGGCCGCGACGAAGGACAGGTCGTTTCCCGACTGGCGCGC CGACTCGCTTTGCTCCCTTGTCTACAATGGCTTCCGAAAAGCCGGTTTTA TTCACTCCGCTTCCGCCTTTGCCGATGACTGCAAACATGATTGGAGCAAA GGGGAAAAAATCCTTCAAGAGGCTTACAATACTTTTCGTTCCACTAATGG AGACCAAAAAGTGAAGGACAAAGCTCAGCTGAAGAAGAACTCCAAGCCGG AGCTCAAGGAAAAGGTTTTATCGAAATCAACCGATGATGAATCTGAATCA AGCACTTCCGATTCGGAGACCAGTTCGCGAGCTCACGGTTCTAGCGACTC GGATGAATCATCATCCGCTTCATCTAGCGATCGTCAGAAGAGCTTGAAGG AGTCAGATTCGGCCTTTTGTTCCACTGTTGGAGACCAAACAATGAAGGAC AAAGCTCAGCTGAGAAAGGACTCCAAGCTCAAGGAAAAGGTTTTGTCGAA GCCAAATGATGATGAATCTGCATCTAGCACTTCTGACTCGGAGACTAGTT CGCGAGTCCAAGGCGCTAGTGGCCTGAAGCGAGCTTCTTCATCTTCGTCG TCCGCCTCCTCCGACTCAGATAGCGAATCATCATCCGCTTCATCTAGCGA TCGTCAGAAGAGCCTCAAAAAGGTATCAGATTCAGCATCGTCACCATCTG AGAGCTCCAGTTCTTCGGAGTCGATGGTGGAAACTCCCGCGAAACCGAAG ACTGTGCGCACGGACGAAAGGCATCCGGGCGCAAAACAAACCTCTCATTT ACATTCACAATCTGGTGCCAAATCTGAGTCTTCTTCAGACTCCGGCAGTT CCTCTTCTCCTTCTAGTGGTCCTTCACCTAGGGAAGAATCTAGCGAGTCA TCCGAGAGTTCCAAAACAAGCTCTTCCTCAAGTTCTTCAGCTGAAGAATC TGACGTGATACCGAGCGCTCGTCCTGGTCTGGGATCGAGTGGAAAGCGTA ACGTGAAGTTTTCATCTGCAAAATCCGAGTTGCTTCCCGATGACGAATCA CCCATGAAGAGCAGCAAGCCTAAACCAGCAAATCCCAAATCCGAGCAGAA CGAGTCAGAATCGACAGGTgattcagactcagactcagaatctgaatctg agtcagcatcagactcggactcTTCATCCCAAGAGACTGAAAAGCCTACT GGAAAGCTTGTTAAAAAGGCTGAAAAGTCTGAGACTTCTGGTCCCGGCAA AGCTGCAGCGCAGAACGGAAACATGAGAGGGTTGAGATCGACGGAAGATA CGAGCCCGTCGAGCTCGTCATCTTCTTCATCGTCTTCATCGTCTTCACCA ACGTCTTCTAGTGAAGACTCGCACACGCCTGCTGCAAAGAACAAAGTTAC AATGACGGATAGCTCCGACAGTGATGATTCCTCCACCAGCAGCTCGTCAA CTGAATCTAGCAGCGAACCAGATTCTCGCGCTCGTAAATCCAGAGCTTTA GAGACCAAGAAGAAGAACGAAATGTCAAAGTCTTCATCTCCATCTGAGAC TTCCGGAGACGATAGCACCGGCAGCGACACCTCGAGCGAGAGCAGCGACA GCAGTGACAGCAGCAGTAGCGAAAGCTACGAGAAGCGTGCAACTAGACGC AAGTCAGGTGTGGTTCAAGATCTTTCTCGAAAATTAGAGAACATAAGCCC GGCAGCTTCAGGTAAATCTAAACGGAAACCCCATGGAATCGCGAAGACGA GAAAGCAGGAGAACAGTTCACTTGCTTCAAAGAAGAACGGAGGTTCTGAG GAGGAGAAGAAGCCTGCAAAGTCTGAATCAAAAGCGAAGACATTAGGTAA TCCAAAAGCGAATCTGAGCTCCGCAAGGCTTAGTAATGGCAACCAGAACG GTGGTACAGGTAATGGGGTACCAAAGACGGAAGCTCAAGCAAGAAAACGG CGACGAAGCGACGCATACGAAAACGGGGAACGAGAGAACCACACGCCATT TAAGCGTGTCAGAGTGGAAGACGTTGTCTTCAAAGACGAACGCCTGAGGG ACAACTCATTTTTCTCCAAGAGAGACACATATGGGACCTGGGCGCATCGC GACTTGGCTGTTACAAAGGGAAAAGGGTTTCGAAAGGAAAAGACTAAAAA GAAGCGACTCAATCATCATGGAGGGAAACTCAGTTTTGAAGTTAACTCTT ACAAGTTCTCAGATGATTCGGACTAA back to top
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