Gcaud2472.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2472.t1
Unique NameGcaud2472.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Homology
BLAST of Gcaud2472.t1 vs. uniprot
Match: A0A2V3J2K6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2K6_9FLOR)

HSP 1 Score: 155 bits (391), Expect = 2.180e-42
Identity = 85/172 (49.42%), Postives = 122/172 (70.93%), Query Frame = 0
Query:   59 MCLSAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSFTYVYNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNSVTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFH----NSQLAYQSIIGILVALSAAFSSSTPSL 226
            M   A AH+TL+F +RLG+TR+ FP LST+LIRS+++GTLS  Y+  +VDY  +IR ++  QW+ +V RG+ A  SI CQ+TAL LISMGN+VT+L TCP I+  MAA+ L EP+  +D+++L  SF GV+ VAQPSFL      +S+ +    IG  +AL+AA+ +S+ S+
Sbjct:    1 MLCCALAHSTLTFLIRLGATRFAFPALSTILIRSVIDGTLSSLYIIKYVDYEENIRSVTGRQWLFVVFRGVTAGCSIFCQVTALKLISMGNAVTLLSTCPTISTVMAAIFLSEPVGSIDVLSLITSFVGVVLVAQPSFLHFPSRSDSEASKDVDIGYGIALAAAWFTSSMSV 172          
BLAST of Gcaud2472.t1 vs. uniprot
Match: A0A369S544_9METZ (Solute carrier family 35 member G1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369S544_9METZ)

HSP 1 Score: 59.3 bits (142), Expect = 9.460e-7
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 0
Query:   41 GRVQHTFTEYPELYGYFIMCLSAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSFTYVYNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNSVTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFHNSQ 202
            G   H    Y     +FI  +SA    T  +F  L +TR     L  +L+  I+        +Y  +D R+S R     Q   +  R +  T+S+SCQ  A   +++G++  I+++ P IT  +AA+ L E     +++A  +SFGGV+ V++P F+F + +
Sbjct:    2 GAKSHLGILYGLSASFFISVMSACVKMTSYYFFLLVATR---SALQIVLLHPII--------IYQQIDIRKSFRL---PQAYFVFGRAIAETISVSCQFYAYQNMNIGDAAAIIYSSPFITGILAAIFLKEKFTLFNLLATIVSFGGVILVSKPPFIFGSGE 149          
BLAST of Gcaud2472.t1 vs. uniprot
Match: D0MI56_RHOM4 (Uncharacterized protein n=7 Tax=Rhodothermus TaxID=29548 RepID=D0MI56_RHOM4)

HSP 1 Score: 56.2 bits (134), Expect = 8.300e-6
Identity = 51/164 (31.10%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   62 SAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSFTYV---YNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNSVTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFHNSQLAYQSIIGILVALSAAFSSS 222
            SAF  + +  FV++       P    +LIRS++  TL ++Y+   +  V +R         +  L++LRG+V  +S+SC   AL  + + +++ +  T P  T  +AAL L EPI   +I  + LS  G++ VA+P FLF  +  A    +G+  A+ AA  S+
Sbjct:    4 SAFMFSLMGLFVKVAGRHL--PSQEIVLIRSVV--TLFYSYLLLRWQRVSWRGQ-------RTGLLILRGVVGFVSLSCLYFALTRLPLADTLVLQHTSPVFTTLLAALWLKEPIGRHEIAGILLSLLGMVLVARPGFLF-GTHTAGLDPLGVAAAMGAAIFSA 155          
The following BLAST results are available for this feature:
BLAST of Gcaud2472.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J2K6_9FLOR2.180e-4249.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A369S544_9METZ9.460e-729.01Solute carrier family 35 member G1 n=2 Tax=Trichop... [more]
D0MI56_RHOM48.300e-631.10Uncharacterized protein n=7 Tax=Rhodothermus TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000620EamA domainPFAMPF00892EamAcoord: 54..191
e-value: 6.8E-11
score: 42.5
NoneNo IPR availablePANTHERPTHR22911:SF6SOLUTE CARRIER FAMILY 35 MEMBER G1coord: 53..222
NoneNo IPR availablePANTHERPTHR22911ACYL-MALONYL CONDENSING ENZYME-RELATEDcoord: 53..222
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 176..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..145
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 221..235
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..150
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 198..202
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 203..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..73
NoneNo IPR availableSUPERFAMILY103481Multidrug resistance efflux transporter EmrEcoord: 114..195
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 178..197
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
NoneNo IPR availableTMHMMTMhelixcoord: 120..142
NoneNo IPR availableTMHMMTMhelixcoord: 85..107
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1970_length_7400_cov_4.182788contigNODE_1970_length_7400_cov_4.182788:2990..3782 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2472.t1Gcaud2472.t1Gracilaria caudata M_176_S67 malemRNANODE_1970_length_7400_cov_4.182788 2990..3782 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MTSEIQSSSSPQRCRRNAPLCYNSIDAPGARVSRSRRSLFGRVQHTFTEY
PELYGYFIMCLSAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSF
TYVYNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNS
VTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFHN
SQLAYQSIIGILVALSAAFSSSTPSLSHVRNSFRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000620EamA_dom