Gcaud2472.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2472.t1
Unique Name	Gcaud2472.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1970_length_7400_cov_4.182788	contig	NODE_1970_length_7400_cov_4.182788:2990..3782 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003283849.1
PFAMs	EamA
Max annot lvl	554915\|Amoebozoa
Evalue	3.78e-08
EggNOG OGs	COG0697@1\|root,KOG4510@2759\|Eukaryota,3XDSP@554915\|Amoebozoa
Description	EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2472	Gcaud2472	Gracilaria caudata M_176_S67 male	gene	NODE_1970_length_7400_cov_4.182788 2990..3782 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1	Gcaud2472.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1970_length_7400_cov_4.182788 2990..3782 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1.stop1	Gcaud2472.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1970_length_7400_cov_4.182788 2990..2992 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1.CDS1	Gcaud2472.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1970_length_7400_cov_4.182788 2990..3028 -
Gcaud2472.t1.CDS2	Gcaud2472.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1970_length_7400_cov_4.182788 3114..3782 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1.exon1	Gcaud2472.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1970_length_7400_cov_4.182788 2990..3028 -
Gcaud2472.t1.exon2	Gcaud2472.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1970_length_7400_cov_4.182788 3114..3782 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1.intron1	Gcaud2472.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1970_length_7400_cov_4.182788 3029..3113 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2472.t1.start1	Gcaud2472.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1970_length_7400_cov_4.182788 3780..3782 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782-
coding sequence from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782-

mRNA sequence

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MTSEIQSSSSPQRCRRNAPLCYNSIDAPGARVSRSRRSLFGRVQHTFTEY
PELYGYFIMCLSAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSF
TYVYNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNS
VTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFHN
SQLAYQSIIGILVALSAAFSSSTPSLSHVRNSFRT*

spliced messenger RNA

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAGAGATTCAGAGCTCCTCCTCGCCTCAGAGATGTCGCCGAAA
CGCGCCGTTGTGCTACAACAGCATTGACGCTCCGGGAGCTCGCGTGTCAC
GGAGCCGTCGCTCTTTGTTTGGTCGTGTACAGCACACGTTCACCGAGTAT
CCTGAGCTCTATGGCTACTTCATCATGTGTCTTTCTGCGTTCGCTCACGC
TACACTTTCATTCTTTGTTCGATTAGGATCTACGCGTTATGGGTTTCCAG
TGTTGTCTACAATGTTGATACGTTCCATAATGGAAGGCACGTTGTCTTTT
ACCTACGTGTATAACTTTGTTGATTACCGTCGCTCCATTCGCTGCATCAG
TCGCTCTCAATGGGTTTTGATCGTTCTCAGAGGAATGGTTGCTACCATGA
GCATTTCTTGTCAGATTACTGCCTTGGGTCTTATATCCATGGGGAATTCC
GTCACTATTCTGTTTACATGCCCAGCTATCACTATGGCCATGGCAGCATT
GATGTTACATGAACCTATTCGCCCCGTTGATATCGTCGCATTGTTCCTGT
CATTTGGAGGCGTTTTGTTTGTTGCGCAGCCCTCTTTCTTATTTCACAAT
TCTCAACTCGCATATCAGAGCATTATCGGTATTCTCGTCGCACTAAGCGC
AGCATTTTCTTCTTCCACCCCATCACTTTCTCACGTGAGGAACAGTTTCA
GAACATAA

protein sequence of Gcaud2472.t1

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MTSEIQSSSSPQRCRRNAPLCYNSIDAPGARVSRSRRSLFGRVQHTFTEY
PELYGYFIMCLSAFAHATLSFFVRLGSTRYGFPVLSTMLIRSIMEGTLSF
TYVYNFVDYRRSIRCISRSQWVLIVLRGMVATMSISCQITALGLISMGNS
VTILFTCPAITMAMAALMLHEPIRPVDIVALFLSFGGVLFVAQPSFLFHN
SQLAYQSIIGILVALSAAFSSSTPSLSHVRNSFRT*

mRNA from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=793bp|location=Sequence derived from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782- (Gracilaria caudata M_176_S67 male)
ATGACTTCAGAGATTCAGAGCTCCTCCTCGCCTCAGAGATGTCGCCGAAA
CGCGCCGTTGTGCTACAACAGCATTGACGCTCCGGGAGCTCGCGTGTCAC
GGAGCCGTCGCTCTTTGTTTGGTCGTGTACAGCACACGTTCACCGAGTAT
CCTGAGCTCTATGGCTACTTCATCATGTGTCTTTCTGCGTTCGCTCACGC
TACACTTTCATTCTTTGTTCGATTAGGATCTACGCGTTATGGGTTTCCAG
TGTTGTCTACAATGTTGATACGTTCCATAATGGAAGGCACGTTGTCTTTT
ACCTACGTGTATAACTTTGTTGATTACCGTCGCTCCATTCGCTGCATCAG
TCGCTCTCAATGGGTTTTGATCGTTCTCAGAGGAATGGTTGCTACCATGA
GCATTTCTTGTCAGATTACTGCCTTGGGTCTTATATCCATGGGGAATTCC
GTCACTATTCTGTTTACATGCCCAGCTATCACTATGGCCATGGCAGCATT
GATGTTACATGAACCTATTCGCCCCGTTGATATCGTCGCATTGTTCCTGT
CATTTGGAGGCGTTTTGTTTGTTGCGCAGCCCTCTTTCTTATTTCACAAT
TCTCAACTCGCATATCAGAGCATTATCGGTATTCTCGTCGCACTAAGCGC
AGCATTTTCTTCTTCCACCGTCAGTGTCATCACTCGATTTCTTGCACATG
ACGTAAACTTTATGATCAATGTCTGCTCACTTTCCATATGTACATTTCTT
ACAGCCATCACTTTCTCACGTGAGGAACAGTTTCAGAACATAA

Coding sequence (CDS) from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782-

>Gcaud2472.t1 ID=Gcaud2472.t1|Name=Gcaud2472.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_1970_length_7400_cov_4.182788:2990..3782- (Gracilaria caudata M_176_S67 male)
ATGACTTCAGAGATTCAGAGCTCCTCCTCGCCTCAGAGATGTCGCCGAAA
CGCGCCGTTGTGCTACAACAGCATTGACGCTCCGGGAGCTCGCGTGTCAC
GGAGCCGTCGCTCTTTGTTTGGTCGTGTACAGCACACGTTCACCGAGTAT
CCTGAGCTCTATGGCTACTTCATCATGTGTCTTTCTGCGTTCGCTCACGC
TACACTTTCATTCTTTGTTCGATTAGGATCTACGCGTTATGGGTTTCCAG
TGTTGTCTACAATGTTGATACGTTCCATAATGGAAGGCACGTTGTCTTTT
ACCTACGTGTATAACTTTGTTGATTACCGTCGCTCCATTCGCTGCATCAG
TCGCTCTCAATGGGTTTTGATCGTTCTCAGAGGAATGGTTGCTACCATGA
GCATTTCTTGTCAGATTACTGCCTTGGGTCTTATATCCATGGGGAATTCC
GTCACTATTCTGTTTACATGCCCAGCTATCACTATGGCCATGGCAGCATT
GATGTTACATGAACCTATTCGCCCCGTTGATATCGTCGCATTGTTCCTGT
CATTTGGAGGCGTTTTGTTTGTTGCGCAGCCCTCTTTCTTATTTCACAAT
TCTCAACTCGCATATCAGAGCATTATCGGTATTCTCGTCGCACTAAGCGC
AGCATTTTCTTCTTCCACCCCATCACTTTCTCACGTGAGGAACAGTTTCA
GAACATAA