Gcaud2436.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2436.t1
Unique NameGcaud2436.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length386
Homology
BLAST of Gcaud2436.t1 vs. uniprot
Match: A0A2V3IUK7_9FLOR (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 363 bits (931), Expect = 4.240e-119
Identity = 188/369 (50.95%), Postives = 254/369 (68.83%), Query Frame = 0
Query:    1 MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSIDLDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPG-----NEHGESTCHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPS--LRGSFEEILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSFLIISLVERIKRR 362
            MM NCT++G+IKDD  C+C+IGIGGW+ SA R + VD+LP F+++GIRV+FHVS+T  +G   FF+TTFD+RSW+C+F++I+LFALAK +D RF P+    D       + R C  F R  WN  R+  +++ST  +++LQ       N+HG    H++ LN+ +GI GL +VLSYEA MTA LVQE V  ++QS+EDLKTCRI+P DVCVP GSA+  FWN+AIA  +CH+ +      RGSFEE L+AV N +CKFGLV DST+  AIHG YCG LL S E I+  GL M+LPKNS  T+AM LATL++R  AS PS ++YF+  S+C   T + + F KL++ FV A  A    + I + +R+ RR
Sbjct:   97 MMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIP-SADEPNAANSWGR-CLHFLRTNWN--RLITSIRSTTLRIVLQSDHDIVQNQHGA---HNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFAIVACLGCISIKMWQRVWRR 458          
BLAST of Gcaud2436.t1 vs. uniprot
Match: A0A2V3IME4_9FLOR (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 313 bits (802), Expect = 1.670e-99
Identity = 152/361 (42.11%), Postives = 226/361 (62.60%), Query Frame = 0
Query:    1 MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSIDLDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNE--HGESTCHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSFLIISLVERI 359
            MM +C+E+G++++D  C CDIGI GW+ +  R++ VD LP F+ +G  V FH+S++ ++G   FF+TTFD  +WV IF L+LLF+  K  DR+F P+     L+E     +R      +    Y R   A++ST  +++L P ++    ++    W+LN  + + GLF++LSYEA MTA LVQE V+  FQSI+D +TCRI P +VC+P G A+E FWN +IA   CHK   P    S++E+  AV NR+CK+GL+ +ST  +AI+  YCG LL +E+ I+  GL MVLPKNS  T+ MS ATL+I    +TP  E+YF    +C  + E  + F KLR+FF +A   G   L++ ++  +
Sbjct:   99 MMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLY-RFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLRIINNV 458          
BLAST of Gcaud2436.t1 vs. uniprot
Match: A0A2V3IMD4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 309 bits (792), Expect = 3.260e-97
Identity = 155/365 (42.47%), Postives = 226/365 (61.92%), Query Frame = 0
Query:    1 MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDR-----RFVPVSIDLDLKEDVR--LYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGESTCHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSE-CHKGNMPSLRGSFEEILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSFLIISLVE 357
            MM  C+E+G+IKDD  C+CDIGIGGW+ ++KR+  VD LP F+++  +V FH+S + ++G   FF+TTFD R W+CIF L+LLFA  ++        R+ P+   +     +   LY  P   F+R   +  R+   M      L+ +P +    +    W+L   + ICGLF++L+YEA MTA +VQE V  EFQS +D +TCRI P DVC+PRG + + +W E +A    CHKG  P L  S+EE+ + V NR+C+FG++ +STV S IH  YCG +L +   I+  GL MVLPK+S  TE MSLATL+I   A+ PS EE++  T  C A+    + F KL++FF++AF  G  FL + +++
Sbjct:   99 MMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSAFGDHARYQPLEPTVTPIRRIAHFLYNHPF--FYRLRISIQRIFSRMI-----LMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGFLFLTVVVIK 456          
BLAST of Gcaud2436.t1 vs. uniprot
Match: A0A2V3IMD5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 281 bits (718), Expect = 1.900e-87
Identity = 151/359 (42.06%), Postives = 214/359 (59.61%), Query Frame = 0
Query:    2 MHNCTEDGSIKDDAR-CQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSIDLDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNE---HGESTCHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSFLIISLV 356
            MH CT + S    +  C CDIGIGGW+ +  RY  VD LP F+H+  RV+ HVS+T  +GE  FFL TFD  SW+ I +L  +F L KL+D RF        L    R+  R C  F  +     R+ +A +S+V +L+LQP NE   +G+ST   W LN+ +GIC LF+VLS+EA MTA LVQE++   ++S ED ++C+I P DVC  RG A+E FWN  IATS CH GN      ++EEI + +A+  CKF +  +S +T+ I    CG L+  EE ++  GL MV+PK S  TEAMS AT+ +     +   E + RK  +C     + + F KL++FF++AF+   + L + L+
Sbjct:   59 MHECTTNQSTGVSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGVSRI--RRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKST-RQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLL 414          
BLAST of Gcaud2436.t1 vs. uniprot
Match: R7Q540_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 108 bits (271), Expect = 2.380e-24
Identity = 59/171 (34.50%), Postives = 90/171 (52.63%), Query Frame = 0
Query:  176 TAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAA 346
            +A LVQ+ ++  ++ ++DLKTC +RP DVCVP+G AI+ FW   I  + CHK   P     +++ ++ +  + C + L   S+        YCG LL + E     GL  VLP+ S  T  +S  T+ +      P+ E Y R T +C  +    +   KLR FF MAF+A
Sbjct:   10 SAALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGKNACHK-EKPVYFSRYKDGIDNLLTKKCLYMLTLSSSGNELTQREYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKC-PEQNLTLNVEKLRFFFYMAFSA 178          
BLAST of Gcaud2436.t1 vs. uniprot
Match: R7Q0P8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 104 bits (260), Expect = 4.070e-22
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 0
Query:    2 MHNC-TEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSIDLD-LKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEH--GESTCHSWLLNITLGICGLFIVLSYEARMT 176
            M  C TE+G++++D  C CD+ +GGW  S  R   VD LP F+ +GI ++ HV  T +     FFLT F +  W  +  L ++F   K++DRRFVP       L        R      +    Y R+ +A++ST+ +++    ++    + +   W+LN+ +  C LFI+L+YE+ MT
Sbjct:  100 MDRCVTEEGTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPY-RLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
BLAST of Gcaud2436.t1 vs. uniprot
Match: R7UWV9_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UWV9_CAPTE)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-10
Identity = 72/329 (21.88%), Postives = 138/329 (41.95%), Query Frame = 0
Query:   14 DARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIF-SLILLFALAKLVDRRFVPVSIDLDLKED--VRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGESTCHSWLLNITLG---ICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEI----LEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSWEE-YFRKTSECRADTENGV 331
            +   + D+  G + +S  R  ++     +   G+   F + +       + FLT    R W+ +  S +++ A   L+D+        +D  ED  V  +E   W   +E  ++     A+   +  L  Q G  H +S    W   +  G   +  L +V SY A + AFL  +  N E  S+EDL    ++ G V     S I+ +++ +        G+     G+F +     + AV +   +F ++ D  + +   G+  G            G G  LPKNS FTE +++   ++R    T + +E ++   ++C ++T + +
Sbjct:   71 EGNTRADLAAGAFTISYDRQSVISFTKPYRDLGMGGLFAIPNR-TAYNPWSFLTPLSYRLWLTMIGSAVVVAAFISLLDKLSPYGHHAMDTNEDGTVDYWEIKNWRREKETMSF---ANALLWALASLFEQGGERHPKS----WSARVAAGTWWLGALILVQSYTANLAAFLTIKISNDEISSVEDLAKSTLKYGSV---EDSQIQTYFDTSTRQPYSDMGHRMRTWGTFYDATYGAVAAVVDGGGEFAMLYDYPILTYWKGLIPGISYTVIPTFGNFGYGFGLPKNSLFTEELTIKIYQLRESGFTDTLDERWYTDLTKCASETTDAL 388          
BLAST of Gcaud2436.t1 vs. uniprot
Match: A0A2T7PVY8_POMCA (PBPe domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PVY8_POMCA)

HSP 1 Score: 68.9 bits (167), Expect = 5.910e-9
Identity = 64/304 (21.05%), Postives = 134/304 (44.08%), Query Frame = 0
Query:   18 QCDIGIGGWYLSAKRYQLVDILPAFIHEG---IRVSFHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSIDLDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGESTCHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIRPGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFE-----EILEAVANRSCKFGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLATLEIRGRASTPSW 313
            + DIG+G + +S+ R  +VD    F+ +G   +    +   + LTG     L+TF    W+C+ +  ++   +  V  ++ P S D+++ ++            R+ W    +G  +    G +++Q  ++H  +     +L     +  L I+  Y A++ + L  E    +  S+EDL    ++P    V  GS  ++F+     T+  +K     + G+ E     + L+ V+  +  F  + D      ++   C  L  +      +GLG++LPK++P+ +A+    L ++      +W
Sbjct:  353 EVDIGVGPYTISSIRETVVDFSVPFMEDGGGILTKKGNSGISILTG-----LSTFSGTIWLCVVATTVVMGFSLFVTGKYSPYS-DVNMSQE-----------RRDTWT---LGTCIIYVCGSVMMQGMDKHPTNVSARCVL-ACWWVFTLLILSVYTAKLASVLTVEVQGAKIDSLEDLLASSVKP---LVVAGSIWDSFFKNPTTTT--YKKIAERMTGAPEVATDADSLDFVSTGTYAF--LHDVNSVKYLYSSDCQKLYLATSTFNNNGLGIILPKDAPYKDAIDTIILRLQEGGILENW 628          
The following BLAST results are available for this feature:
BLAST of Gcaud2436.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IUK7_9FLOR4.240e-11950.95Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
A0A2V3IME4_9FLOR1.670e-9942.11Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD4_9FLOR3.260e-9742.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMD5_9FLOR1.900e-8742.06Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q540_CHOCR2.380e-2434.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q0P8_CHOCR4.070e-2232.40Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7UWV9_CAPTE1.720e-1021.88Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
A0A2T7PVY8_POMCA5.910e-921.05PBPe domain-containing protein n=2 Tax=Pomacea can... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 62..225
e-value: 4.8E-8
score: 34.7
NoneNo IPR availablePANTHERPTHR18966:SF354SUBFAMILY NOT NAMEDcoord: 8..360
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 8..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 91..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 172..335
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 336..356
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 357..385
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 15..305
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 154..171
NoneNo IPR availableTMHMMTMhelixcoord: 338..356
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 72..325
e-value: 1.1E-7
score: 31.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_42_length_67898_cov_4.520993contigNODE_42_length_67898_cov_4.520993:20607..22012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2436.t1Gcaud2436.t1Gracilaria caudata M_176_S67 malemRNANODE_42_length_67898_cov_4.520993 20607..22012 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2436.t1 ID=Gcaud2436.t1|Name=Gcaud2436.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MMHNCTEDGSIKDDARCQCDIGIGGWYLSAKRYQLVDILPAFIHEGIRVS
FHVSSTFLTGEDFFFLTTFDVRSWVCIFSLILLFALAKLVDRRFVPVSID
LDLKEDVRLYERPCWPFHREEWNYDRVGEAMKSTVGKLLLQPGNEHGEST
CHSWLLNITLGICGLFIVLSYEARMTAFLVQERVNPEFQSIEDLKTCRIR
PGDVCVPRGSAIENFWNEAIATSECHKGNMPSLRGSFEEILEAVANRSCK
FGLVPDSTVTSAIHGMYCGHLLKSEENIFIDGLGMVLPKNSPFTEAMSLA
TLEIRGRASTPSWEEYFRKTSECRADTENGVMFSKLRVFFVMAFAAGGSF
LIISLVERIKRRTRKRLSRRRQLVSINLDDKGFAY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt