Gcaud2427.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2427.t1
Unique NameGcaud2427.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Homology
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A2V3J5X7_9FLOR (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5X7_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 2.080e-47
Identity = 76/104 (73.08%), Postives = 91/104 (87.50%), Query Frame = 0
Query:   35 PVRSCSDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD 138
            PVR CS+IS+QEV+NIAKLAQLRLS+EE+ K+VPEI+K++ FFDT SEVDVEGIEPMTSAQ++ NVMRED P RF NVD +M E P  E++YIRVPKLSSNP+D
Sbjct:    2 PVRCCSEISKQEVQNIAKLAQLRLSEEEVNKVVPEIKKIINFFDTFSEVDVEGIEPMTSAQDVHNVMREDEPSRFHNVDGMMQEVPCSEREYIRVPKLSSNPTD 105          
BLAST of Gcaud2427.t1 vs. uniprot
Match: R7QQW7_CHOCR (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQW7_CHOCR)

HSP 1 Score: 120 bits (301), Expect = 1.090e-31
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 0
Query:   29 RRSRSPP----------VRSCSDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD 138
            R+SRSP           + +C++ + +EV+ IA+LAQL LS++E+  + PE+QKV+ FF++I+E+DVEG EPM S  +  NV+R+DVP  FSNVD IM E P  EK++IRVPK+SS  SD
Sbjct:   76 RKSRSPTHRIYRNSASSIEACAEATPEEVKRIARLAQLNLSEDEITTMTPELQKVIGFFNSINEIDVEGFEPMASPSDANNVLRDDVPVMFSNVDAIMDEVPVAEKEFIRVPKISSESSD 195          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A6T6MT11_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6MT11_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 2.020e-28
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 0
Query:   17 RIGQSTVYRSACRRSRSPPVRSCS---DISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKL 132
            R+G +T +R A RRS    VR CS   +I+R  VE  AKLA L+LSDEE+G+I PE+Q +V F + I+ VDV G+EP    ++L NV+RED P  F   D+++ EAP LE DY+RVPK+
Sbjct:   10 RLG-ATAWRGASRRS----VRCCSARVEITRDVVEKTAKLASLQLSDEEVGRITPELQNIVGFVEQINAVDVSGVEPTLRVEDLWNVLREDQPAIFPAQDEMLEEAPQLESDYVRVPKI 123          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A7S2ZNI6_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNI6_9RHOD)

HSP 1 Score: 104 bits (259), Expect = 3.750e-26
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 0
Query:   17 RIGQSTVYRSACRRSRSPPVRSCS---DISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKL 132
            R+G S  +R A RRS    VR CS   +I+R+ VE  AKLA L+LS+EE+ +I PE+QK++ F + I+ VDV G+EP    ++L NV+RED P  F   D+++ EAP LE D+IRVPK+
Sbjct:   10 RLGTSA-WRGASRRS----VRCCSAKVEITRELVEKTAKLASLQLSNEEVDRITPELQKIIGFVEQINAVDVSGVEPTLRVEDLWNVLREDKPTIFPAQDEMLEEAPLLESDFIRVPKI 123          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A0R1WEQ2_9LACO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=2 Tax=Paucilactobacillus TaxID=2767890 RepID=A0A0R1WEQ2_9LACO)

HSP 1 Score: 82.8 bits (203), Expect = 5.410e-18
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0
Query:   40 SDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD 138
            S I  Q+V+++A LA+L  SD++L K  P+++ ++  F+TI +VD  G+EPMTSA +  N MRED        D+++  AP  E  +I+VP +     D
Sbjct:    3 SHIDEQQVKHVASLAKLEFSDDQLSKFTPQLESIIDMFETIDKVDTTGVEPMTSASDQVNAMREDKAVNSHQRDELLKNAPDTEDGFIKVPAIIDESGD 101          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A1Z5H470_9LACO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=8 Tax=Lactobacillales TaxID=186826 RepID=A0A1Z5H470_9LACO)

HSP 1 Score: 80.1 bits (196), Expect = 5.820e-17
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 0
Query:   40 SDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD 138
            S I +++V+++A LA+L L+D++L     ++ +++  F+T++EVD EGIEP +S  +  NVMREDV   +     ++  AP  EK YI+VP +     D
Sbjct:    3 SRIDQEQVQHVASLAKLSLNDDQLKYFTTQLDEIIGLFETLNEVDTEGIEPTSSVTDQINVMREDVADNWGQSQALLKNAPDAEKGYIKVPTIIDESED 101          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A0R1Z4E3_9LACO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=3 Tax=Lentilactobacillus parafarraginis TaxID=390842 RepID=A0A0R1Z4E3_9LACO)

HSP 1 Score: 80.1 bits (196), Expect = 6.140e-17
Identity = 35/91 (38.46%), Postives = 62/91 (68.13%), Query Frame = 0
Query:   42 ISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKL 132
            IS  +V ++A+LA+L+++D++L     ++ +++  F+T+SEVD +GI+P +S  +  NVMREDV   ++  D ++A AP  +  YIRVP +
Sbjct:    5 ISEDQVRHVAQLAKLKINDDQLPYFTTQLDQIIGLFETLSEVDTDGIKPTSSVTDQVNVMREDVADNWNQRDGLLASAPDTQDGYIRVPTI 95          
BLAST of Gcaud2427.t1 vs. uniprot
Match: C2EVE0_9LACO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=5 Tax=Lactobacillaceae TaxID=33958 RepID=C2EVE0_9LACO)

HSP 1 Score: 80.1 bits (196), Expect = 6.470e-17
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 0
Query:   40 SDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSN--VDDIMAEAPSLEKDYIRVPKLSSNPSD 138
            S I+ Q+VE++A+LA+L   DEEL K   ++  ++  F+ ++ VD EG+EPMTSA + +NVMRED   + S    D ++  AP  +  YI+VP +     D
Sbjct:    3 SKITEQQVEHVAELAKLEFKDEELTKFTTQLGSIIDMFEDLTNVDTEGVEPMTSASDRENVMREDKAVKSSKEETDALLNNAPDTDDGYIKVPAIIDESED 103          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A2E2B6G7_9BACT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B6G7_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 8.460e-17
Identity = 35/91 (38.46%), Postives = 64/91 (70.33%), Query Frame = 0
Query:   42 ISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKL 132
            I+  +V ++A+L++L+LSDE++ +   ++ +V+ + D +SE+DV+G+EPM  A ++ NV+REDVP     VD  +A AP+ +  + +VPK+
Sbjct:    5 ITDADVRHVAQLSRLKLSDEQIAEYTQQLGRVLGYIDKLSELDVDGVEPMAHALDMSNVLREDVPVEGMPVDKALATAPASDPPFFKVPKV 95          
BLAST of Gcaud2427.t1 vs. uniprot
Match: A0A0R2F2G1_9LACO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=2 Tax=Secundilactobacillus TaxID=2767892 RepID=A0A0R2F2G1_9LACO)

HSP 1 Score: 79.0 bits (193), Expect = 1.690e-16
Identity = 36/93 (38.71%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   40 SDISRQEVENIAKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNVMREDVPHRFSNVDDIMAEAPSLEKDYIRVPKL 132
            S I +++V+++A LA+L L+ ++L     ++  ++  F+T+SEVD EG+EP +S  +  NVMREDV   +   D ++A AP  E  YI+VP +
Sbjct:    3 SRIDQEQVQHVASLAKLDLNADQLAYFTTQLDDIIGLFETLSEVDTEGVEPTSSVSDQINVMREDVADNWGQRDALLANAPEAENGYIKVPAI 95          
The following BLAST results are available for this feature:
BLAST of Gcaud2427.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5X7_9FLOR2.080e-4773.08Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
R7QQW7_CHOCR1.090e-3150.00Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A6T6MT11_9RHOD2.020e-2850.42Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A7S2ZNI6_9RHOD3.750e-2648.74Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A0R1WEQ2_9LACO5.410e-1838.38Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A1Z5H470_9LACO5.820e-1737.37Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A0R1Z4E3_9LACO6.140e-1738.46Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
C2EVE0_9LACO6.470e-1739.60Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2E2B6G7_9BACT8.460e-1738.46Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A0R2F2G1_9LACO1.690e-1638.71Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 58..129
e-value: 1.8E-16
score: 60.2
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 42..132
e-value: 1.8E-24
score: 83.9
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 26..131
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 41..134
score: 19.497498
NoneNo IPR availableGENE3D1.10.20.60coord: 40..84
e-value: 5.0E-12
score: 47.6
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 42..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:26070..26563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1Gcaud2427.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 26070..26563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MKAGEPAFISSFPCWSRIGQSTVYRSACRRSRSPPVRSCSDISRQEVENI
AKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNV
MREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003837Asp/Glu-ADT_csu
IPR036113Asp/Glu-ADT_sf_sub_c