Gcaud2423.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2423.t2
Unique NameGcaud2423.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length390
Homology
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A2V3JBD7_9FLOR (Kinetochore protein mis18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JBD7_9FLOR)

HSP 1 Score: 257 bits (656), Expect = 4.100e-79
Identity = 126/244 (51.64%), Postives = 177/244 (72.54%), Query Frame = 0
Query:   50 SEASREQANGNDSVILKNDVQKEPTDSDYSDIIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKLFEEFQ 293
            SEA+ +  N  DS   +    +EP    + DI+FQC +C+ VVGD++S H+ ++++  LSL+ ASNV+VED++HVCQ GFA GCTFKRI+C NC + +GR+Y+STV +LD YRSL+T + +SL +Y+LGSG+T +G+ +    S  P PQ +G E  V+ EDF+ LD YV +LGKAVN  TDA   YG ALEE++++F+D+++L KDIRQ LEY QNI+LVWEERFR+FD+F++   K  E  Q
Sbjct:   46 SEATVDAQNEPDSTTHEGMAGEEP--DIFDDIVFQCGECNVVVGDTKSRHLTDVKNGILSLKIASNVKVEDRVHVCQSGFAAGCTFKRIMCLNCKSPLGRVYASTVASLDVYRSLFTFNCESLQTYKLGSGKTLEGKCIPDEESNQPAPQNNGSEATVTVEDFVTLDKYVANLGKAVNNLTDAFGHYGGALEEMRREFRDNNDLTKDIRQSLEYVQNIILVWEERFRSFDAFRQNTTKSIEGCQ 287          
BLAST of Gcaud2423.t2 vs. uniprot
Match: R7QDN6_CHOCR (Mis18 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDN6_CHOCR)

HSP 1 Score: 142 bits (358), Expect = 5.030e-35
Identity = 83/227 (36.56%), Postives = 129/227 (56.83%), Query Frame = 0
Query:   67 NDVQKEPTDSDYSDIIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPR-----VSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKL 288
            +D+ +E  D   +D+IFQC+ C +VVGD+ S +  +LE  T+SL+AA +V +E K+ +   GF  GCT++ I C  C   +GR+Y ST PALD  R  YT D  +L SY+LG+  T DG  ++  N       RD +        V+TE + AL  +V  L + VNK + + D     ++ L      ++N + D++  +E  QN+ML+WEERFR   + ++R  +L
Sbjct:   68 SDLPEEDDDGLSNDVIFQCSSCRSVVGDTLSEYEAHLESKTISLKAARSVVIEGKMKMSSTGFDAGCTYRPIRCSECQHHLGRVYGSTTPALDSRRCTYTFDTTTLVSYQLGTCLTIDGGRMEPGNRHGTGNGRDSQSGEAGKMSVTTEAYDALHAHVGSLTELVNKLSASFDDNCLEVKTLTDA---NNNTIADLKTGIENAQNMMLLWEERFRRLAACEQRLEQL 291          
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A8B8AQ38_CRAVI (uncharacterized protein LOC111103880 isoform X1 n=3 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8AQ38_CRAVI)

HSP 1 Score: 79.0 bits (193), Expect = 1.600e-12
Identity = 49/173 (28.32%), Postives = 85/173 (49.13%), Query Frame = 0
Query:   76 SDYSDIIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVEDK-LHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDF 247
            +D   ++FQCA+C+ ++GDS +   V+    T++L+  SN  VED+ + +   GF  G T+ ++ C  C   +GR Y   V  LD  R +YTL  D L SY++GS                    +D  +   S  D +++   V DL   +++  D +   G+ L+ L++ +
Sbjct:   25 ADEPPLVFQCAQCNVIIGDSTAWACVDDISRTITLKNVSNAVVEDEEMKIANTGFDAGSTYYKMSCATCREDIGRRYKGAVNHLDSARGMYTLFVDKLSSYQIGSYN------------------KDSNDTAASLSDILSM-AKVRDLNMQLSRLGDIIQDMGERLQALEQGY 178          
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A6U9Q7N0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9Q7N0_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.270e-11
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0
Query:   79 SDIIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRV-EDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGE 186
            S ++FQC  C  V+GDS +    +    T+SLRAAS+VRV +D+    ++G   G T+  + C  CD  VG++Y +T  ALD  R  ++L+ + L +Y LG      GE
Sbjct:   14 SAVVFQCVVCAAVLGDSSAFACSHAGLRTVSLRAASHVRVLDDEPETSREGVDAGSTYFAVKCSGCDAQVGKVYLTTPRALDLMRDAFSLESERLKNYVLGEHELTLGE 122          
BLAST of Gcaud2423.t2 vs. uniprot
Match: UPI000719C120 (protein Mis18-alpha-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C120)

HSP 1 Score: 71.2 bits (173), Expect = 4.860e-11
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   71 KEPTDS-DYSDIIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAAS-NVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGS----GRTPDGETLDVPNSQH 195
            +EPT S   + I+FQCAKC+ ++GDS S    N   + + L A + NV     +    +    G T+  + C+NC T +GR+Y +T   LD+ R L+      + SY LGS      T     LD+P +++
Sbjct:    2 EEPTPSVGDAHIVFQCAKCNVIIGDSTSWAFANKSLSGVVLHATTQNVTETQMVRTSDEDVDFGSTYTLLQCNNCKTTIGRVYKTTPKKLDEVRDLFMFSVPMISSYHLGSFEQKTNTNAENLLDIPTARY 132          
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A4D9CX68_9STRA (Mis18 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX68_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.260e-11
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   81 IIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGS 179
            ++FQCA+C  +VGDS      + +   ++LR A  +         ++G   G TF  + C+ C T +G++Y +T P LD  R+L+TL  D+L+S+ LG+
Sbjct:   27 VVFQCAECRRIVGDSLGLSSADEDLRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGT 125          
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A0E9NJN7_SAICN (Mis18 domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NJN7_SAICN)

HSP 1 Score: 72.0 bits (175), Expect = 4.620e-10
Identity = 32/113 (28.32%), Postives = 64/113 (56.64%), Query Frame = 0
Query:   81 IIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVEDKLHVCQKGFAC--GCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVP 191
            +IFQCA C T++GDS +    +++ NT +L +A N+ + + + +     +   GCT+  + C  C+  +G++Y +T+  LD+ R +YT+   +   Y +G+  +     +D+P
Sbjct:  156 VIFQCASCRTIIGDSYAHITSHIDLNTFTLSSAPNITIREPILLSTDDESADKGCTYSELACAGCEATLGKMYRTTLRTLDEIRDMYTISLPAATLYEVGTTNS----NVDIP 264          
BLAST of Gcaud2423.t2 vs. uniprot
Match: F2U1H3_SALR5 (Mis18 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1H3_SALR5)

HSP 1 Score: 69.3 bits (168), Expect = 5.540e-10
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   81 IIFQCAKCHTVVGDSRSPHVVNLEHNTLSLR-AASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGS 179
            ++FQCA C  VVGDS +    + + NT++L  AA  V++  +L    +G   G T+    C +C   +GR+Y +T   LD  R L T D D+L SY+LGS
Sbjct:   53 LVFQCAACRAVVGDSFAWVCSDQDLNTITLTGAAPGVKINGQLETSTQGRDLGSTYVTFQC-SCGAILGRVYQTTARHLDHMRDLMTFDLDALTSYKLGS 151          
BLAST of Gcaud2423.t2 vs. uniprot
Match: A0A830H7G4_9CHLO (Mis18 domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H7G4_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 3.230e-9
Identity = 56/207 (27.05%), Postives = 92/207 (44.44%), Query Frame = 0
Query:   81 IIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAASNVRVED-KLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERAN 286
            +++QCA C  V GD+      N E  T++L+AASN+ V++ +     +G     T+  I C +CD+ VG+ Y +T  +LD  R  ++  +D+L +Y LG             N    + + DG        D  A  T   D G  +    +A+      + EL K        MK        T NI+L++ ER  N ++  + A+
Sbjct:   20 LVWQCANCRVVFGDTYGFVCANEELRTITLKAASNIVVDEAEPRTSAEGIDASSTYFAIRCKSCDSMVGKFYRATPRSLDVLRDSFSFSHDALITYTLGH------------NELTVEDEEDGG------GDAAAAGTANGDGGATLENVVEAIKSVEGQVAELDKQH------MK--------TMNILLLYSERLENLETLLDVAH 194          
BLAST of Gcaud2423.t2 vs. uniprot
Match: UPI0007759FB2 (protein Mis18-alpha n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI0007759FB2)

HSP 1 Score: 64.3 bits (155), Expect = 1.670e-8
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   81 IIFQCAKCHTVVGDSRSPHVVNLEHNTLSLRAAS-NVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRIYSSTVPALDQYRSLYTLDYDSLDSYRLGS 179
            ++F CA+C+ +VGD+ S    + + N + L + + NV V+ +  +  +    GC  + + C  C   +G IY  T   LD  R L+ L  DSL+SY LGS
Sbjct:   35 MVFLCARCNRIVGDTLSWETNDEDTNCILLNSVTRNVSVDKEQRLSSQAGETGCILETLFCSGCSMNLGNIYRCTPRHLDYKRDLFCLKVDSLESYTLGS 134          
The following BLAST results are available for this feature:
BLAST of Gcaud2423.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2V3JBD7_9FLOR4.100e-7951.64Kinetochore protein mis18 n=1 Tax=Gracilariopsis c... [more]
R7QDN6_CHOCR5.030e-3536.56Mis18 domain-containing protein n=1 Tax=Chondrus c... [more]
A0A8B8AQ38_CRAVI1.600e-1228.32uncharacterized protein LOC111103880 isoform X1 n=... [more]
A0A6U9Q7N0_9CHLO2.270e-1137.61Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
UPI000719C1204.860e-1132.82protein Mis18-alpha-like n=1 Tax=Priapulus caudatu... [more]
A0A4D9CX68_9STRA6.260e-1134.34Mis18 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A0E9NJN7_SAICN4.620e-1028.32Mis18 domain-containing protein n=2 Tax=Saitoella ... [more]
F2U1H3_SALR55.540e-1039.00Mis18 domain-containing protein n=1 Tax=Salpingoec... [more]
A0A830H7G4_9CHLO3.230e-927.05Mis18 domain-containing protein n=2 Tax=Pycnococcu... [more]
UPI0007759FB21.670e-834.00protein Mis18-alpha n=1 Tax=Protobothrops mucrosqu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 226..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availablePANTHERPTHR16431NEUROGENIC PROTEIN MASTERMINDcoord: 16..261
IPR004910Yippee/Mis18/CereblonPFAMPF03226Yippee-Mis18coord: 82..181
e-value: 9.8E-19
score: 67.5
IPR034752Mis18 domainPROSITEPS51793MIS18coord: 80..177
score: 35.338219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:18494..19663 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2423.t2Gcaud2423.t2Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 18494..19663 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=390bp
MAKRGYSRRAGARTGEKEKHHDHSKGHAQNQPSDDSSRVRGDNEMHDTAS
EASREQANGNDSVILKNDVQKEPTDSDYSDIIFQCAKCHTVVGDSRSPHV
VNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRI
YSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQR
DGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDS
DNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQ
STGRKFSKLDASVDRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPV
VGDKIKGTFAPVPYTLPRNSRYKQQTAGRSSPRAKRRRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18/Cereblon
IPR034752Mis18