Gcaud2423.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2423.t1
Unique Name	Gcaud2423.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	227

Homology

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BLAST of Gcaud2423.t1 vs. uniprot
Match: A0A2V3JBD7_9FLOR (Kinetochore protein mis18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JBD7_9FLOR)

HSP 1 Score: 143 bits (361), Expect = 1.740e-37
Identity = 68/130 (52.31%), Postives = 94/130 (72.31%), Query Frame = 0

Query:    1 LYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKLFEEFQ 130
            L+T + +SL +Y+LGSG+T +G+ +    S  P PQ +G E  V+ EDF+ LD YV +LGKAVN  TDA   YG ALEE++++F+D+++L KDIRQ LEY QNI+LVWEERFR+FD+F++   K  E  Q
Sbjct:  158 LFTFNCESLQTYKLGSGKTLEGKCIPDEESNQPAPQNNGSEATVTVEDFVTLDKYVANLGKAVNNLTDAFGHYGGALEEMRREFRDNNDLTKDIRQSLEYVQNIILVWEERFRSFDAFRQNTTKSIEGCQ 287

[Close]

BLAST of Gcaud2423.t1 vs. uniprot
Match: R7QDN6_CHOCR (Mis18 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDN6_CHOCR)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-6
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 0

Query:    2 YTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPR-----VSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKL 125
            YT D  +L SY+LG+  T DG  ++  N       RD +        V+TE + AL  +V  L + VNK + + D     ++ L      ++N + D++  +E  QN+ML+WEERFR   + ++R  +L
Sbjct:  166 YTFDTTTLVSYQLGTCLTIDGGRMEPGNRHGTGNGRDSQSGEAGKMSVTTEAYDALHAHVGSLTELVNKLSASFDDNCLEVKTLTDA---NNNTIADLKTGIENAQNMMLLWEERFRRLAACEQRLEQL 291

The following BLAST results are available for this feature:

BLAST of Gcaud2423.t1 vs. uniprot

BLAST of Gcaud2423.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3JBD7_9FLOR	1.740e-37	52.31	Kinetochore protein mis18 n=1 Tax=Gracilariopsis c...	[more]
R7QDN6_CHOCR	1.700e-6	31.78	Mis18 domain-containing protein n=1 Tax=Chondrus c...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..45

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:18494..19174 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t1	Gcaud2423.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_295_length_31939_cov_4.445679 18494..19174 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2423.t1 ID=Gcaud2423.t1|Name=Gcaud2423.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
LYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQRDGEEPRVSTEDFI
ALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDSDNLMKDIRQCLEY
TQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQSTGRKFSKLDASV
DRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPVVGDKIKGTFAPVP
YTLPRNSRYKQQTAGRSSPRAKRRRS*