Gcaud2419.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2419.t1
Unique NameGcaud2419.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length277
Homology
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A2V3J775_9FLOR (DNA-directed RNA polymerase III subunit RPC8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J775_9FLOR)

HSP 1 Score: 362 bits (929), Expect = 7.500e-124
Identity = 170/231 (73.59%), Postives = 194/231 (83.98%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQGLGDPLWWYEEEEAEGEXXXXXXXEAEMGEAEMQESEE 231
            MFKLVTIEDV+LVPARLFGYPRL++LE+VINKRLSDK+IPGVGLVIAFWDWV+VGEDALQIHSGE +TKCTFRVVVF+PFEGE +F RVSGAY+ G+FME+ FFDAITV K+NLPRPS +DE ERVWIWKP FEE GE QT+YMDVTNESVFR +E+ FEDSWR+PP+E+  + RNPMSI  ALYD  +QDNQGLGDPLWWYEE E E E       +    EAE+ E  E
Sbjct:    1 MFKLVTIEDVVLVPARLFGYPRLESLEYVINKRLSDKIIPGVGLVIAFWDWVKVGEDALQIHSGESNTKCTFRVVVFSPFEGEAVFGRVSGAYDGGVFMELGFFDAITVKKENLPRPSSYDEDERVWIWKPTFEEEGEAQTFYMDVTNESVFRVMELMFEDSWRIPPTERNVEGRNPMSIFAALYDEAVQDNQGLGDPLWWYEEGEGEDEGEEGGVGDGAKEEAEVLEDGE 231          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A6G1IX85_9PLEO (DNA-directed rna polymerase III 25 kd polypeptide n=1 Tax=Lentithecium fluviatile CBS 122367 TaxID=1168545 RepID=A0A6G1IX85_9PLEO)

HSP 1 Score: 135 bits (341), Expect = 1.820e-35
Identity = 82/229 (35.81%), Postives = 126/229 (55.02%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSR-NPMSIVGALYDAVL--QDNQGLGDPLWWYE-EEEAEGEXXXXXXXEAEMGEAE 225
            MF L TIED++ +     G P   A++  IN + S+K+I  VGL I  +D +Q  E  +   +G  +    FR+VVF PF GE+L+ R+  +  EGI ++++FF+ I+VP QNLP+P  FD +E VWIW+P   +G E    + D   ESV    +V+ E+ +   PS ++ D+  N ++ +G     ++   +  GLG  LWW E  EE E         + +MGE E
Sbjct:    1 MFILSTIEDLIQIEPEATGRPSAQAIKDAINTKFSNKIIQKVGLCICLFDILQTSEGLIGHGTGLVNVNVEFRMVVFRPFRGEILYGRIKSSNEEGIVIDVEFFNEISVPYQNLPKPCTFDHAEGVWIWRP---DGAE---LFFD-RGESVL--FKVEHEEWFDQKPSVQQKDAHGNTITDIGGTAWRIIGSMEQSGLGPTLWWGEGNEETEQGGQEEADEDVDMGEEE 220          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A6A6ISN4_9PLEO (DNA-directed RNA polymeras-like protein III 25 kDa polypeptide n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6ISN4_9PLEO)

HSP 1 Score: 133 bits (335), Expect = 1.310e-34
Identity = 77/211 (36.49%), Postives = 109/211 (51.66%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQ-GLGDPLWWYEEEEAEGE 210
            MF L TIED++ +P R FG P   AL+  IN + S+K+I  VGL +  WD +Q  E  +   +G  +    FR+ VF PF GE+L+ R+  A  EGI +++ F   + +P QNL   S FDE E  WIW+P   EGG     + D     +FR  + ++ D  + P   +K +           +  +   NQ GLG  LWW   EEA GE
Sbjct:    1 MFILTTIEDLIQIPPRDFGKPSAQALKDAINAKYSNKIIQKVGLCLCMWDLLQTSEGLIGHGTGLVNVNVEFRMTVFRPFRGEILYGRIKSANEEGIVIDLDFTSEVFIPHQNLFENSTFDEGESTWIWRP---EGGAE--LFFDKGEPVLFRVEQEEWID--QKPTMVRKNEQGEVEETRDTAWRLIGSMNQSGLGPTLWW---EEAGGE 201          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A2V1DMR2_9PLEO (DNA-directed RNA polymeras-like protein III 25 kDa polypeptide n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1DMR2_9PLEO)

HSP 1 Score: 131 bits (329), Expect = 1.020e-33
Identity = 72/207 (34.78%), Postives = 108/207 (52.17%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAV-LQDNQGLGDPLWWYEEEE 206
            MF L TIED++ +  + FG P   A++  IN + S+KVI  VGL +  WD +Q  E  +   +G  +    FR+ VF PF GE+L+ R+  +  EGI +++ F   + VP  NL   S FD++E+ WIWK    EGG     + D     +F+    ++ D  + P  E+K D  N +   G  +  + L +  GLG  LWW   EE
Sbjct:    1 MFILTTIEDLIQITPQEFGKPSAQAIKDAINTKYSNKVIQNVGLCLCLWDILQTSEGLIGHGTGLVNVNVEFRMTVFRPFRGEILYGRIKSSNEEGIILDLDFTSEVFVPYTNLFEGSDFDQTEQTWIWK---HEGGSE--LFFDRGESVLFKVDREEWYD--QKPTIEQKDDEGNVIETRGTAWRLIGLMNFSGLGPTLWWEPGEE 200          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A0D8Y3L5_DICVI (RNA polymerase Rpb7 protein n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8Y3L5_DICVI)

HSP 1 Score: 131 bits (329), Expect = 1.020e-33
Identity = 71/203 (34.98%), Postives = 109/203 (53.69%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMS--IVGALYDAVLQDNQGLGDPLWW 201
            MF L  +ED +++     G      L   IN+RLS++++P +GL I  +D ++VG   +    G   T+  FR+VVF PF  EV+ ARV+ + +EG+ + ++FF+ IT+P   LP P  F++SE+VW W+   ++G  P   YMD      FR +E  F D   V P+    D +N  S  I+G + +       GLG   WW
Sbjct:    6 MFVLALLEDTIVIKPHELGIELGSVLRRRINQRLSNRIVPQLGLCICVYDLLEVGVTYILPGEGSGHTRVKFRLVVFRPFVDEVIQARVASSSSEGLKLSVEFFEDITIPADRLPEPHIFEQSEKVWYWEYPSDDGEPPARLYMDPGKIVRFRVVENIFRD---VKPNPTSDDVQNEKSYEIIGTMAET------GLGCVAWW 199          
BLAST of Gcaud2419.t1 vs. uniprot
Match: B6K0P2_SCHJY (DNA-directed RNA polymerase III complex subunit Rpc25 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K0P2_SCHJY)

HSP 1 Score: 130 bits (326), Expect = 2.050e-33
Identity = 77/207 (37.20%), Postives = 105/207 (50.72%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWK-PVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVG----ALYDAVLQ-DNQGLGDPLWW 201
            MF L  I DV+ +    F  P  +AL   INK+ ++KVI  VGL IA +D++ +GE  ++   G       FR++VF PF GEV+  R+      GI + + FFD I VPK+ LP PS ++  ER W+W+ P  E  GEP   +MDV  E  F+     F D   + PS    +S    + V     A Y  V      GLG P WW
Sbjct:    1 MFVLSVISDVVKIHPSDFWKPTKEALSDEINKKYANKVIQQVGLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTELGIRVTLGFFDDIFVPKEMLPDPSVYNAQERAWVWRVPSEETDGEPSELFMDVGEEIRFQIESEHFID---ISPSRPSANSAAATTDVRTEAEAPYSLVASCSKDGLGIPAWW 204          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A163I1R2_DIDRA (DNA-directed RNA polymerase n=4 Tax=Didymellaceae TaxID=683158 RepID=A0A163I1R2_DIDRA)

HSP 1 Score: 129 bits (325), Expect = 3.580e-33
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQ-GLGDPLWWYE-EEEAEGE 210
            MF L TI+D++ +  + FG P    ++  IN + S+K++PGVGL IA WD +   E  +   +G  +    FR+ VF PF GE+++ R+  +  EGI +++ F   I VP QNL   S F+++E VW+W     +G E    ++D     +FR  + ++ D  + P  E++ ++   +   G  +  +   NQ GLG  LWW E EEE EGE
Sbjct:    1 MFILSTIQDLIQLKPQDFGKPSAQTIKDAINDKYSNKIVPGVGLCIALWDLLSATEGLIGHGTGLVNINAEFRLAVFRPFRGEIIYGRIKSSNPEGIVIDLDFTSEIFVPYQNLFENSSFNQAENVWVWN---SDGTE---LFLDKGEPVLFRVEQEEWID--QRPTIEQRNENNEIVDERGTAWRVIGSMNQAGLGPTLWWGEQEEEXEGE 204          
BLAST of Gcaud2419.t1 vs. uniprot
Match: E4ZW44_LEPMJ (Similar to DNA-directed RNA polymerase III 25 kDa polypeptide n=3 Tax=Pleosporineae TaxID=715340 RepID=E4ZW44_LEPMJ)

HSP 1 Score: 127 bits (320), Expect = 1.980e-32
Identity = 71/211 (33.65%), Postives = 114/211 (54.03%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQ-GLGDPLWWYEEEEAEGE 210
            MF L TI+D++ +  + F  P   A++ V+N + S+K++PG+GL I  WD +   E  +   +G  +    FR+ VF PF GE+++ R+  +  EGI +++ F   I +P QNL   S FD++E VW+W     +G E    + D     +FR  + ++ D  + P   +K +  N +   G  +  +   NQ GLG  LWW E+EE EGE
Sbjct:    1 MFILTTIQDLIQIAPQDFKKPSDQAIKDVVNDKYSNKIVPGIGLCICMWDLLSASEGLIGHGTGLVNVNIEFRMAVFRPFRGEIIYGRIKSSSPEGIIIDLDFTSEIFIPYQNLFENSSFDQAESVWVWN---SDGTE---LFFDKGEPVLFRVEQEEWID--QRPTIVQKDEDGNVIEERGTAWRIIGSMNQAGLGPTLWWGEQEE-EGE 202          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A0C2CNL1_9BILA (RNA polymerase Rpb7 protein n=3 Tax=Ancylostoma TaxID=29169 RepID=A0A0C2CNL1_9BILA)

HSP 1 Score: 127 bits (318), Expect = 3.710e-32
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSWRVPPSEKKGDSRNPMS--IVGALYDAVLQDNQGLGDPLWWYEEEEAEGE 210
            MF L  +ED + V     G      L   IN+RLS+KV+P +GL I  +D ++VG   +    G   TK  FR+VVF PF  EV+ ARV  + + G+ + ++FF+ I +P + LP P  F++SE+VW W+   E+G  P   YMD      FR +E  F D   V P+    +++   S  I+G + +       GLG   WW +  E  GE
Sbjct:    1 MFVLALLEDTVAVKPHELGKELGSVLRRRINQRLSNKVVPELGLCICVYDLLEVGVTYILPGEGSGHTKVKFRLVVFRPFVDEVIQARVVSSNSHGLTLSVEFFEDIIIPAERLPEPHVFEQSEQVWYWEYPAEDGQPPARLYMDPGKTVRFRVVENIFRD---VKPNLTPEEAQKEKSYEIIGTMAET------GLGCVAWWSQTVEDGGE 203          
BLAST of Gcaud2419.t1 vs. uniprot
Match: A0A177D844_ALTAL (S1 motif domain-containing protein n=7 Tax=Alternaria TaxID=5598 RepID=A0A177D844_ALTAL)

HSP 1 Score: 126 bits (316), Expect = 8.160e-32
Identity = 74/232 (31.90%), Postives = 118/232 (50.86%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWDWVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFMEMKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNESVFRAIEVKFEDSW-RVPPSEKKGDSRNPMSIVGALYDAVLQDNQGLGDPLWWYEEEEAEGEXXXXXXXEAEMGEAEMQESEE 231
            MF L TI+D++ +  + F  P   A++ V+N + S++++PG+GL +  WD V   E  +   +G  +    FR+ VF PF GE+L+ R+  +  EGI ++++F   + VP QNLP  S F ++E VWIW     EG E    + D     +FR    ++ D    +   ++KG+          +  ++ Q   GLG  LWW E  E E         E E G+ EM+ +EE
Sbjct:    1 MFILTTIQDLIQIKPQDFEKPSAQAIKDVVNDKYSNRIVPGIGLCLCMWDLVSATEGLIGHGTGLVNVNIEFRMTVFRPFRGEILYGRIKSSNEEGIIIDLEFTSEVFVPYQNLPENSSFSKAEMVWIWN---SEGTE---LFFDKGEPVLFRVEHEEWYDQRPTIVEKDEKGEIIEERPTAWKIIGSMGQP--GLGPTLWWAEGGEEE---------EGEEGDVEMEGAEE 215          
The following BLAST results are available for this feature:
BLAST of Gcaud2419.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J775_9FLOR7.500e-12473.59DNA-directed RNA polymerase III subunit RPC8 n=1 T... [more]
A0A6G1IX85_9PLEO1.820e-3535.81DNA-directed rna polymerase III 25 kd polypeptide ... [more]
A0A6A6ISN4_9PLEO1.310e-3436.49DNA-directed RNA polymeras-like protein III 25 kDa... [more]
A0A2V1DMR2_9PLEO1.020e-3334.78DNA-directed RNA polymeras-like protein III 25 kDa... [more]
A0A0D8Y3L5_DICVI1.020e-3334.98RNA polymerase Rpb7 protein n=1 Tax=Dictyocaulus v... [more]
B6K0P2_SCHJY2.050e-3337.20DNA-directed RNA polymerase III complex subunit Rp... [more]
A0A163I1R2_DIDRA3.580e-3334.43DNA-directed RNA polymerase n=4 Tax=Didymellaceae ... [more]
E4ZW44_LEPMJ1.980e-3233.65Similar to DNA-directed RNA polymerase III 25 kDa ... [more]
A0A0C2CNL1_9BILA3.710e-3235.38RNA polymerase Rpb7 protein n=3 Tax=Ancylostoma Ta... [more]
A0A177D844_ALTAL8.160e-3231.90S1 motif domain-containing protein n=7 Tax=Alterna... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 219..239
NoneNo IPR availableGENE3D2.40.50.140coord: 81..202
e-value: 3.2E-23
score: 84.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..225
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 1..204
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..80
e-value: 3.7E-17
score: 64.4
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..77
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 83..174
e-value: 8.4E-17
score: 61.6
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..204
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 79..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:12604..13434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2419.t1Gcaud2419.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 12604..13434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWD
WVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFME
MKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNES
VFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQGLGDPLW
WYEEEEAEGEEEGEEEGEAEMGEAEMQESEEKLNVAKEEKIEPIEVHHKF
EGNAVGVYEEEHVDSQWHQDLEGEGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR013238RNA_pol_III_Rbc25
IPR045113Rpb7-like
IPR012340NA-bd_OB-fold