Gcaud2417.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2417.t1
Unique NameGcaud2417.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length501
Homology
BLAST of Gcaud2417.t1 vs. uniprot
Match: A0A2V3ID49_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID49_9FLOR)

HSP 1 Score: 514 bits (1323), Expect = 1.840e-175
Identity = 303/518 (58.49%), Postives = 375/518 (72.39%), Query Frame = 0
Query:    1 MRHPPYRVSQVSPANVTQGVAFCCNFSTPDLWSDMASSFDMGEMFIPDHQFRNFMCGSVIAASPFHKHLICALGSAATRHSSIMASYKTHVRRMVVDMRPTQSINVIEFSWMEDGMLIVTAKVLMPPPPGSRRSTAGCSGAYALFNNVTPGGTLPAAPMSFVSFVEAPLCPSCFAQGSLGCYCSAALASQNRYSSAAWPQVTTDNIYDPASTTLQNVRIRLASIRRFSHVKVTAHVVTPQLQQRHNGLPIRTYKLGPSRFIIKAVDFRPSTPFESDTLRQVADRWRLLRAGSLRVLSLLAKE---QAEVSPNEDTNL--LQSKPNSLLSLPFTDLEQCSSISTNMFDELLQDALNGCLSATS---------DENTQSNTCHLCGKSNQDLPDGMDLSICTC-MLKTDKQTTSSCESYEIHDIMDDKQPAKLKSSK---HPTCHLCGKAFSQQGSLNRHLKNIHEEKKIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKKCERIETKAYRIPVERLKN 500
            MR PPY  + +SPA+V QGVAFCCNF TPD+W+DM SSF+MGEMFIPDH++  FMCGS++AA+PFHKHLICALG AA R   ++ SY+T VRRMVVDM  ++SIN+ EFSWMEDGMLIVTAK+L+PPPPG+ ++TAGC+GA+ALF+NV PGG LPAAP SFVSFVEAP CP+C+ QG+LGC C  + +     SSA WP     + ++P   T+ NVR +LA I+R +HVKVTAHVVTPQ   R NGLP RTYKLGPSRF +KAV FRPSTP E+DTLRQVADRWRLLR+ SLR LS+   E   + E  P E+  +  L + P    S    D + C+S+ +      + + L G  +A+          ++ ++ N C  CG+S + L D  DLS+C+C +L    + T+S ES  +   +DD +  +  +SK    PTC LCGK FSQQGSLNRHLKNIHEEK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXSKKCERIETK+ R+PVER+KN
Sbjct:   45 MRRPPYHRTAISPAHVAQGVAFCCNFETPDVWADMDSSFEMGEMFIPDHKYHQFMCGSIVAATPFHKHLICALGQAAARDYRVLPSYRTRVRRMVVDMVSSRSINMFEFSWMEDGMLIVTAKILVPPPPGTLKATAGCTGAFALFDNVAPGGDLPAAPRSFVSFVEAPRCPTCYQQGALGCCCPNSPSLLEAESSAIWPPTFETDKHEPTVHTMTNVRAKLACIQRVAHVKVTAHVVTPQTLLRGNGLPWRTYKLGPSRFTVKAVMFRPSTPLEADTLRQVADRWRLLRSASLRYLSMRTDEDGVEMEQDPLEERPMIDLTAVPTKQFSHEPNDPDLCTSMLSVPACTFVTEMLKGARAASPMDLVPTYPPEQISEVNACSSCGRSREPLLDENDLSVCSCDLLSVLSERTASLES--LSPSLDDSKNCESVNSKCLKRPTCSLCGKTFSQQGSLNRHLKNIHEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKKCERIETKSLRVPVERMKN 560          
BLAST of Gcaud2417.t1 vs. uniprot
Match: R7QBY3_CHOCR (C2H2-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBY3_CHOCR)

HSP 1 Score: 372 bits (955), Expect = 7.200e-116
Identity = 215/472 (45.55%), Postives = 278/472 (58.90%), Query Frame = 0
Query:    1 MRHPPYRVSQVSPANVTQGVAFCCNFSTPDLWSDMASSFDMGEMFIPDHQFRNFMCGSVIAASPFHKHLICALGSAATRHSSIMASYKTHVRRMVVDMRPTQSINVIEFSWMEDGMLIVTAKVLMPPPPGSRRSTAGCSGAYALFNNVTPGGTLPAAPMSFVSFVEAPLCPSCFAQGSLGCYCS-AALASQNRY----SSAAWPQVTTDNIYDPASTTLQNVRIRLASIRRFSHVKVTAHVVTPQLQQRHNGLPIRTYKLGPSRFIIKAVDFRPSTPFESDTLRQVADRWRLLRAGSLRVLSLL--------------AKEQAEVSPNEDTNLLQSKPNSLLSLPFTDLEQCSSISTNMFDELLQDALNGCLSATSDENTQSNTCHLCGKSNQDLPDGMDLSICTCMLKTDKQTTSSCESYEI---HDIMDDKQPAKLKSSKHPTCHLCGKAFSQQGSLNRHLKNIHEEKKI 450
            MR  P+  + VSP  V QG+AFCCNFS P  W DM+ SFDMGEMF+P H + +FMCG+V+AA+ +HKHLICALG AA R + ++ SY+T+VRRMVVDM  ++SIN+IEFSWM DG LIVT K+L+PP P      AGC+GA+ALF +V P G  P  P S VSF+E P CP C A GSLGCYCS  AL    +Y    SSA WP     ++      T  N+R RL  I+  SHVKVTAHVVT Q   +  G P RTYKLGPSRF+I+AV FRP+T +E+D+LRQVAD +RL+R+GSL+    L               +EQ E  P + T   Q  P+       TD  +  +    MFD   +         +   +  S+ C  C   N    DG+    C+          S  ++        ++ ++       +K  +C LCGK+FSQQGSLNRHLKN+H+EKKI
Sbjct:  158 MRSEPFCTTAVSPVKVAQGIAFCCNFSVPPQWEDMSESFDMGEMFVPSHAYSHFMCGTVVAATSYHKHLICALGPAAARDAHVLPSYQTNVRRMVVDMGSSRSINIIEFSWMNDGALIVTVKILVPPDPAFPVRAAGCTGAFALFTDVFPAGPTPLVPRSLVSFIEVPRCPVCIASGSLGCYCSHQALERFAQYKDERSSAVWPPRLVQDVQIAGIDTYHNIRSRLDMIQHISHVKVTAHVVTGQDVMQEMGPPARTYKLGPSRFVIRAVLFRPATGYEADSLRQVADGFRLVRSGSLKATRALQELEHARYEVAEAGVEEQFEDKPEQST---QDDPHEWKGAKITD--ETIAPPVEMFDLQKRHPREYETVISGRSSHVSSACLAC--ENPVPIDGIVSHTCSRARSLGFSAVSGSKAGNALLPGSLVTEELSDHSFLTKKISCPLCGKSFSQQGSLNRHLKNVHQEKKI 622          
The following BLAST results are available for this feature:
BLAST of Gcaud2417.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ID49_9FLOR1.840e-17558.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBY3_CHOCR7.200e-11645.55C2H2-type domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 422..445
e-value: 0.002
score: 27.4
coord: 450..473
e-value: 0.013
score: 24.7
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 423..445
e-value: 3.9E-5
score: 23.9
coord: 451..473
e-value: 0.0022
score: 18.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 452..473
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 424..445
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 422..450
score: 12.445236
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 450..478
score: 9.597952
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 390..476
e-value: 2.1E-13
score: 52.1
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 422..470

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:7987..9602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2417.t1Gcaud2417.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 7987..9602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2417.t1 ID=Gcaud2417.t1|Name=Gcaud2417.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MRHPPYRVSQVSPANVTQGVAFCCNFSTPDLWSDMASSFDMGEMFIPDHQ
FRNFMCGSVIAASPFHKHLICALGSAATRHSSIMASYKTHVRRMVVDMRP
TQSINVIEFSWMEDGMLIVTAKVLMPPPPGSRRSTAGCSGAYALFNNVTP
GGTLPAAPMSFVSFVEAPLCPSCFAQGSLGCYCSAALASQNRYSSAAWPQ
VTTDNIYDPASTTLQNVRIRLASIRRFSHVKVTAHVVTPQLQQRHNGLPI
RTYKLGPSRFIIKAVDFRPSTPFESDTLRQVADRWRLLRAGSLRVLSLLA
KEQAEVSPNEDTNLLQSKPNSLLSLPFTDLEQCSSISTNMFDELLQDALN
GCLSATSDENTQSNTCHLCGKSNQDLPDGMDLSICTCMLKTDKQTTSSCE
SYEIHDIMDDKQPAKLKSSKHPTCHLCGKAFSQQGSLNRHLKNIHEEKKI
PCQYCPMSFGQMFDLRRHQKRKHPDRRVASKKCERIETKAYRIPVERLKN
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf