Gcaud2416.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2416.t1
Unique NameGcaud2416.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length289
Homology
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A2V3ID20_9FLOR (RING-H2 finger protein ATL80 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID20_9FLOR)

HSP 1 Score: 389 bits (1000), Expect = 2.040e-133
Identity = 208/333 (62.46%), Postives = 240/333 (72.07%), Query Frame = 0
Query:    1 MASEAPSSRRWTSRLLHLLPRRRRRAPDSHRPSVAPADTRLA----------------------------------------AVRFTRLDGVDDVHDNNHARERLMYSVLADVDVIEEGDMFAIVDRMSDDDDYQVARPDFQYFQERVRYGNARNTYYFASRRQTRANRLTDDYMMEFRRNVRMLRNSAAAAPTDPASTSRYECAASDDQIEALPTIIMEKGETRSVKEIFDSMRDDG-----ATNEHTSDECGGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT 288
            M+S+ PS+RRWT+R+LHL PRRRRRAP S RPSVAP D+                                           A R+ RLD  D + D NH+   +MYSVLAD   IE+GDM AIV+ MSDDDDYQ+ARP+++ FQERVR+ N RNTYYFA RRQTR +R+ D++  EFRRN+RMLR++ A A     S +RYECAASDDQIEALPTI+MEKG+TRSVK+IFDSM+DD      A     S +CGGLMTSYTECAICLCEFE GDEITALPCGH+FHLTGCVREWLRNHARTCPTCRADICAPSC SDDVNSHSAT+ATSEDLT
Sbjct:    1 MSSDTPSARRWTARILHLFPRRRRRAPHSQRPSVAPVDSSPPSRTTRNRQPRPSDTPSVDLSLSXXXXXXXXXSTPALPSPPAARYPRLDDADHLADVNHSTA-VMYSVLAD---IEDGDMVAIVNPMSDDDDYQMARPEYRLFQERVRFANGRNTYYFAGRRQTRISRINDEFANEFRRNLRMLRSNMAGA-----SVNRYECAASDDQIEALPTIVMEKGDTRSVKQIFDSMKDDSHVAVAAPATAASHQCGGLMTSYTECAICLCEFEAGDEITALPCGHVFHLTGCVREWLRNHARTCPTCRADICAPSCASDDVNSHSATLATSEDLT 324          
BLAST of Gcaud2416.t1 vs. uniprot
Match: R7QBY7_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBY7_CHOCR)

HSP 1 Score: 171 bits (432), Expect = 1.650e-49
Identity = 100/176 (56.82%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  115 NTYYF-ASRRQTRANRLTDDYMMEFRRNVRMLRNSAAAAPTDPASTSRYECAASDDQIEALPTIIMEKGETRSVKEIFDSMRDDGATNEHTSDECG-GLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADICAPSCGSDD-VNSHSATMATSEDL 287
            N YY  A RR  R   LT +   EF   V  +R ++     DP +  R+E AASDDQIEALP  +MEKGETRSV+ IF  M          ++E G G     TECAICL +FE GDEIT LPCGH FHLTGCVREWLR+HARTCPTCRADIC  S GS D + SHSAT+ATSE++
Sbjct:    5 NAYYISAPRRPVRHFHLTTELEPEFGWGVHTVRLNS-----DPRA-QRFEYAASDDQIEALPAFVMEKGETRSVQRIFADMGVPEHEKMAAAEEDGDGAADGLTECAICLSDFEAGDEITLLPCGHFFHLTGCVREWLRDHARTCPTCRADICNRSTGSSDGLGSHSATVATSEEI 174          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A7R9Y4J7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y4J7_9VIRI)

HSP 1 Score: 70.1 bits (170), Expect = 3.060e-10
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  198 GATNEHTSDECGGLMTSY-TECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADI 264
            G   E TS   G L +    EC+ICL EFE GD +  LPCGH  H  GCV  WL N + TCP CRA +
Sbjct:  183 GDQRERTSARAGALPSPLGLECSICLAEFEDGDVLRDLPCGHSMH-AGCVDRWLTNVSPTCPVCRAQV 249          
BLAST of Gcaud2416.t1 vs. uniprot
Match: G0SW61_RHOT2 (RING-type domain-containing protein n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=G0SW61_RHOT2)

HSP 1 Score: 71.2 bits (173), Expect = 3.230e-10
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0
Query:  214 SYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADICAP 267
            S TEC  CLC+FEPGD + +LPCGHLFH    V EWL      CP CR  + AP
Sbjct:  503 SITECPFCLCDFEPGDLVMSLPCGHLFHAQE-VTEWLEEQKGVCPVCRMSVLAP 555          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A7R9Y5U5_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y5U5_9VIRI)

HSP 1 Score: 70.1 bits (170), Expect = 6.220e-10
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  198 GATNEHTSDECGGLMTSY-TECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADI 264
            G   E TS   G L +    EC+ICL EFE GD +  LPCGH  H  GCV  WL N + TCP CRA +
Sbjct:  330 GDQRERTSARAGALPSPLGLECSICLAEFEDGDVLRDLPCGHSMH-AGCVDRWLTNVSPTCPVCRAQV 396          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A7S1YGP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YGP6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.590e-9
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 0
Query:  200 TNEHTSDECGGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADI 264
            + EH  DE  G      EC ICL EFE GD++  LPCGH +H   CV  WL   + TCP C+ D+
Sbjct:  287 SEEHEDDESDGDCGHLLECTICLEEFEIGDKLRTLPCGHFYHCE-CVTRWLIQRSSTCPLCKLDL 350          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A251T1V7_HELAN (RING-type E3 ubiquitin transferase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T1V7_HELAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.820e-9
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 0
Query:  198 GATNEHTSDECGGLMTSYTECAICLCEFEPGDEITALP-CGHLFHLTGCVREWLRNHARTCPTCRADICAPS 268
            G    H   +  GL      CA+CLCEFE GDE+  LP C H FH+  C+  WL +H R+CP CR D   PS
Sbjct:   66 GLIPSHKHKKVTGLEDDEPMCAVCLCEFEEGDELRTLPECMHSFHVP-CIDMWLYSH-RSCPICRLDAARPS 135          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A511KNR2_RHOTO (PA domain containing zinc finger, C3HC4 RING-type protein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KNR2_RHOTO)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-9
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0
Query:  214 SYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADICA 266
            S TEC  CLC+FEPGD + +LPCGHLFH    V EWL      CP CR  + A
Sbjct:  535 SITECPFCLCDFEPGDLVMSLPCGHLFHAQE-VTEWLEEQKGVCPVCRMSVLA 586          
BLAST of Gcaud2416.t1 vs. uniprot
Match: G4TPA9_SERID (RING-type domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TPA9_SERID)

HSP 1 Score: 67.8 bits (164), Expect = 4.650e-9
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 0
Query:  212 MTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADICAP 267
              S TECAIC+CEFE GD +  LPCGH+FH    V  WL    + CP C+ D+  P
Sbjct:  498 FASQTECAICICEFEVGDRVRVLPCGHIFHKDE-VDPWLIKQRKVCPVCKYDVTNP 552          
BLAST of Gcaud2416.t1 vs. uniprot
Match: A0A6A4QR83_LUPAL (Putative transcription factor C2H2 family n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4QR83_LUPAL)

HSP 1 Score: 61.6 bits (148), Expect = 4.880e-9
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0
Query:  209 GGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWLRNHARTCPTCRADI 264
            G  + S  EC ICLC +E G+E+ ALPC H FH T C+ +W++  A TCP C+ +I
Sbjct:    2 GRYLKSACECCICLCSYENGEELHALPCNHHFHST-CILKWVKMKA-TCPLCKYNI 55          
The following BLAST results are available for this feature:
BLAST of Gcaud2416.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ID20_9FLOR2.040e-13362.46RING-H2 finger protein ATL80 n=1 Tax=Gracilariopsi... [more]
R7QBY7_CHOCR1.650e-4956.82RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A7R9Y4J7_9VIRI3.060e-1050.00Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
G0SW61_RHOT23.230e-1055.56RING-type domain-containing protein n=4 Tax=Rhodos... [more]
A0A7R9Y5U5_9VIRI6.220e-1050.00Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S1YGP6_9STRA1.590e-946.15Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A251T1V7_HELAN1.820e-945.83RING-type E3 ubiquitin transferase n=1 Tax=Heliant... [more]
A0A511KNR2_RHOTO2.600e-954.72PA domain containing zinc finger, C3HC4 RING-type ... [more]
G4TPA9_SERID4.650e-950.00RING-type domain-containing protein n=1 Tax=Serend... [more]
A0A6A4QR83_LUPAL4.880e-948.21Putative transcription factor C2H2 family n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 218..260
e-value: 3.9E-4
score: 29.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 217..261
e-value: 8.8E-13
score: 48.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 218..261
score: 11.338544
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 194..267
e-value: 3.5E-16
score: 60.2
NoneNo IPR availablePANTHERPTHR45977TARGET OF ERK KINASE MPK-1coord: 174..275
NoneNo IPR availablePANTHERPTHR45977:SF28TARGET OF ERK KINASE MPK-1coord: 174..275
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 217..261
e-value: 3.03756E-18
score: 74.6457
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 217..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:3950..4924 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2416.t1Gcaud2416.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 3950..4924 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2416.t1 ID=Gcaud2416.t1|Name=Gcaud2416.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=289bp
MASEAPSSRRWTSRLLHLLPRRRRRAPDSHRPSVAPADTRLAAVRFTRLD
GVDDVHDNNHARERLMYSVLADVDVIEEGDMFAIVDRMSDDDDYQVARPD
FQYFQERVRYGNARNTYYFASRRQTRANRLTDDYMMEFRRNVRMLRNSAA
AAPTDPASTSRYECAASDDQIEALPTIIMEKGETRSVKEIFDSMRDDGAT
NEHTSDECGGLMTSYTECAICLCEFEPGDEITALPCGHLFHLTGCVREWL
RNHARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD