Gcaud2378.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2378.t1
Unique NameGcaud2378.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length110
Homology
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A2V3J2W8_9FLOR (Sodium/potassium/calcium exchanger 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2W8_9FLOR)

HSP 1 Score: 103 bits (257), Expect = 1.420e-23
Identity = 60/107 (56.07%), Postives = 71/107 (66.36%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFLLATTVLLLIVL 107
            MV+AA ++GCL+ IPA +MG+TVLA G SVP AL    +          SN  GSNVFD+  GLG PWFLGHL  KE IAI   PITTVV+PI+ L A  V L+IVL
Sbjct:  405 MVEAARIVGCLIGIPATIMGLTVLAAGTSVPDALASISVARNGAGDMAVSNAIGSNVFDILLGLGFPWFLGHLILKEQIAIPVEPITTVVIPIVILFAIMVALVIVL 511          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A1X6P179_PORUM (Na_Ca_ex domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P179_PORUM)

HSP 1 Score: 90.9 bits (224), Expect = 9.440e-20
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFL 96
            MV+AA   GC++ IPA+V+G+TVLA G SVP AL    + ++       SN  GSNVFD+  GLGLPW LGHL  KEP  I  +P++++V+P++ L
Sbjct:  155 MVEAARHAGCIVNIPASVLGLTVLAAGTSVPDALASITVAKQGRGDMAVSNALGSNVFDIGLGLGLPWLLGHLILKEPQRIPTTPVSSIVVPVVIL 250          
BLAST of Gcaud2378.t1 vs. uniprot
Match: R7QEG4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEG4_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 2.620e-17
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFL 96
            MV+AA   GCL+ IPA+ MG+TVLA G SVP AL    +          SN  GSNVFD+  GLG PWF+G L +K  I I   PITTVV+PI+ L
Sbjct:  390 MVEAARFSGCLIGIPASAMGLTVLAAGTSVPDALASISVARGGSGDMAVSNAIGSNVFDILLGLGFPWFIGGLAKKT-ITIPTDPITTVVVPILIL 484          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A4S4Z0_OSTLU (CaCA family transporter: sodium ion/potassium ion/calcium ion (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S4Z0_OSTLU)

HSP 1 Score: 72.0 bits (175), Expect = 1.830e-12
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLP 92
            MV+  + IGCLL+IPA VMG TVLA G S+P AL    + ++       +N  GSNVFD++ GLGLPW L +L+ ++P  IT S  TT +LP
Sbjct:  330 MVEWCARIGCLLKIPAIVMGTTVLAAGTSIPDALSSISVAKDGFADMAVANAVGSNVFDIWLGLGLPWLL-YLSWQKPSYITVS--TTELLP 418          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A2D4CCE6_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCE6_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 1.990e-12
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 0
Query:    9 GCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAI 81
            GCL  IP+A+MG+T++A G SVP AL    +  + +     SN  GSNVFD+  GLGLP+FL +L  K+P+AI
Sbjct:  506 GCLAGIPSALMGLTIIAAGTSVPDALSSVLVARDGQGDMAVSNAIGSNVFDILLGLGLPFFLSNLIYKKPVAI 578          
BLAST of Gcaud2378.t1 vs. uniprot
Match: K3WNP6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNP6_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-12
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    9 GCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAI 81
            GC+  IP+A+MG+T++A G S+P AL    +  +       SN  GSNVFD+  GLGLP+FL +L  KEP+A+
Sbjct:  508 GCIAGIPSALMGLTIIAAGTSIPDALSSILVARDGHGDMAVSNALGSNVFDILLGLGLPFFLSNLVYKEPVAV 580          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A7S2H093_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H093_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.030e-12
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIF 95
            MVQ ++ +GCLL+I   +MG+ VL+VG S+P AL    + ++ E     SN  GSNVFD+  GLG+PW L  +   + + ++      V + I+F
Sbjct:    1 MVQCSAAVGCLLDISPVIMGIVVLSVGTSIPDALGSVAVAKKGEADMAISNAVGSNVFDILLGLGVPWTLYTIFSGKSVTMSHQCSVAVPIAILF 95          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A7S0PR16_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PR16_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 2.390e-11
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEP 78
            MV+  + IGCLL IPA VMG TVLA G S+P AL    + +E       +N  GSNVFD++ GLGLPW L +L+ ++P
Sbjct:  489 MVEWCARIGCLLGIPAVVMGTTVLAAGTSIPDALSSIAVAKEGLANMAVANAVGSNVFDIWLGLGLPWLL-YLSWQKP 565          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A7S2H048_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H048_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.290e-11
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIF 95
            MVQ A+ +GCLL+I   +MG+ VL+VG S+P AL    + ++ E     SN  GSNVFD+  GLG+PW L  +   + + ++      V + I+F
Sbjct:  327 MVQCAAAVGCLLDISPVIMGIVVLSVGTSIPDALGSVAVAKKGEADMAISNAVGSNVFDILLGLGVPWTLYTIFSGKSVTMSHQCSVAVPIAILF 421          
BLAST of Gcaud2378.t1 vs. uniprot
Match: A0A814RKW5_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814RKW5_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 4.330e-11
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    1 MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFSNRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITES 84
            MV   +VIG    IP +VMG+T LA G S+P AL    +V + +     SN FGSNVFDL  GL LPWF+  LT  EP+ I  +
Sbjct:  381 MVWMVTVIGFTFSIPDSVMGITFLAAGSSIPDALASVLVVRQVDMGV--SNTFGSNVFDLLIGLALPWFIKTLTSGEPVHINSN 462          
The following BLAST results are available for this feature:
BLAST of Gcaud2378.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2W8_9FLOR1.420e-2356.07Sodium/potassium/calcium exchanger 4 n=1 Tax=Graci... [more]
A0A1X6P179_PORUM9.440e-2048.96Na_Ca_ex domain-containing protein n=1 Tax=Porphyr... [more]
R7QEG4_CHOCR2.620e-1752.08Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A4S4Z0_OSTLU1.830e-1248.91CaCA family transporter: sodium ion/potassium ion/... [more]
A0A2D4CCE6_PYTIN1.990e-1249.32Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
K3WNP6_GLOUD3.700e-1246.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2H093_9STRA9.030e-1237.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PR16_9CHLO2.390e-1150.00Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A7S2H048_9STRA4.290e-1138.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A814RKW5_9BILA4.330e-1147.62Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 1..107
e-value: 2.3E-14
score: 53.6
IPR044880NCX, central ion-binding domain superfamilyGENE3D1.20.1420.30coord: 1..110
e-value: 1.5E-14
score: 56.0
NoneNo IPR availablePANTHERPTHR10846:SF8INNER MEMBRANE PROTEIN YRBGcoord: 1..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 70..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..69
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
IPR004481Sodium/potassium/calcium exchangerPANTHERPTHR10846SODIUM/POTASSIUM/CALCIUM EXCHANGERcoord: 1..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4550_length_2178_cov_10.391471contigNODE_4550_length_2178_cov_10.391471:2..331 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2378.t1Gcaud2378.t1Gracilaria caudata M_176_S67 malemRNANODE_4550_length_2178_cov_10.391471 2..331 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=110bp
MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFS
NRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFLLATT
VLLLIVLAVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
IPR044880NCX_ion-bd_dom_sf
IPR004481K/Na/Ca-exchanger