Gcaud2357.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2357.t1
Unique NameGcaud2357.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length217
Homology
[Close]
BLAST of Gcaud2357.t1 vs. uniprot
Match: R7QEA0_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEA0_CHOCR)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-17
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:  142 LRSFQAKDEDKHFPCPICLDALETEPVSAGRCNHMMHTSCLRGWLAKDVNAACPICRAPY 201
            L S +  D DK  PCPICL ALE EPVS G+C H+MH+SCL+ WLAKD  +ACP+CR  Y
Sbjct:  164 LVSMEVSDRDKGNPCPICLGALEEEPVSTGQCLHLMHSSCLKSWLAKDTKSACPVCRVSY 223
[Close]
BLAST of Gcaud2357.t1 vs. uniprot
Match: A0A2V3J0E8_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0 
Query:  142 LRSFQAKDEDKHFPCPICLDALETEPVSAGRCNHMMHTSCLRGWLAKD 189
            L SF A +++K+ PCPICL  LE E VS G+C H++HTSCLR WLAKD
Sbjct:   63 LLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKD 110
The following BLAST results are available for this feature:
BLAST of Gcaud2357.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QEA0_CHOCR1.550e-1761.67RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A2V3J0E8_9FLOR2.080e-1162.50RING-type domain-containing protein n=1 Tax=Gracil... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 156..197
e-value: 9.5E-7
score: 38.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 156..198
e-value: 2.3E-10
score: 40.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 156..198
score: 12.666314
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 142..211
e-value: 4.3E-14
score: 53.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..52
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 137..204
NoneNo IPR availableTMHMMTMhelixcoord: 34..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:54836..55486 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2357.t1Gcaud2357.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 54836..55486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MQLSPPLVIQSTSIRQDNDRSSPQTEPDTVRPRFYILAFCVAAVLFALFN
IFRRRRLFSRSRSARVSRLFQHSRVHRPPPPVYRPYSTAHPRTTIFVPVV
NHFRDRAAADQFNADFAEAFRSSFSHDLQLTHAAEPPKEVYLRSFQAKDE
DKHFPCPICLDALETEPVSAGRCNHMMHTSCLRGWLAKDVNAACPICRAP
YDDFSSAPTYSSRIVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD